Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PSQ21_RS27805 Genome accession   NZ_CP117709
Coordinates   6227385..6228182 (-) Length   265 a.a.
NCBI ID   WP_274033980.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6222385..6233182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS27790 - 6222506..6223267 (+) 762 WP_274033976.1 GNAT family N-acetyltransferase -
  PSQ21_RS27795 - 6223328..6225232 (+) 1905 WP_274033977.1 IucA/IucC family siderophore biosynthesis protein -
  PSQ21_RS27800 - 6225271..6227241 (+) 1971 WP_274033978.1 ATP-dependent DNA helicase -
  PSQ21_RS27805 dinR/lexA 6227385..6228182 (-) 798 WP_274033980.1 transcriptional repressor LexA Regulator
  PSQ21_RS27810 nrdR 6228672..6229184 (+) 513 WP_274033982.1 transcriptional regulator NrdR -
  PSQ21_RS27815 - 6229358..6232255 (+) 2898 WP_274033984.1 vitamin B12-dependent ribonucleotide reductase -
  PSQ21_RS27820 - 6232405..6232941 (-) 537 WP_274033987.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28767.48 Da        Isoelectric Point: 7.4761

>NTDB_id=718567 PSQ21_RS27805 WP_274033980.1 6227385..6228182(-) (dinR/lexA) [Streptomyces sp. MMBL 11-1]
MTTTADSATITARDHRSQSRLEPVHAMNDSVTNTDGSEPARPGRSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=718567 PSQ21_RS27805 WP_274033980.1 6227385..6228182(-) (dinR/lexA) [Streptomyces sp. MMBL 11-1]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCGGGACCATCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCACGAACACGGACGGGTCCGAGCCCGCGCGCCCGGGACGTTCCATGCCCGGCAGGCCCCCCGGCATCC
GGGCGGACAGCTCGGGGCTCACCGACCGGCAACGGCGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGGCGGGGGTAC
CCGCCCTCCATGCGGGAGATCGGCCAGGCGGTGGGCCTGTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGCCCTGGA
GCGCAAGGGCTTCCTCCGCCGGGACCCGCACCGTCCCCGCGCCTACGAGGTGCGCGGATCGGACCAGCCCAGCACCCAGC
CGACCGACACGACGGGCAAGCCCGCCGCGTCCTATGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGTCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGG
CGACTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGAGACA
TCGTCGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCCGCCGGGAGGACGGTCACGTATGGCTGCTCCCTCAC
AACGCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37