Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NWA05_RS09695 Genome accession   NZ_CP102719
Coordinates   2032915..2033520 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2027915..2038520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWA05_RS09675 - 2028310..2030070 (-) 1761 WP_000156448.1 Lon protease family protein -
  NWA05_RS09680 matP 2030256..2030708 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NWA05_RS09685 ompA 2030780..2031832 (-) 1053 WP_001670727.1 porin OmpA -
  NWA05_RS09690 sulA 2032189..2032698 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NWA05_RS09695 sxy/tfoX 2032915..2033520 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NWA05_RS09700 yccS 2033507..2035660 (-) 2154 WP_000950881.1 YccS family putative transporter -
  NWA05_RS09705 - 2035679..2036125 (-) 447 WP_001261222.1 YccF domain-containing protein -
  NWA05_RS09710 helD 2036249..2038303 (+) 2055 WP_023228225.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=718559 NWA05_RS09695 WP_001202375.1 2032915..2033520(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS1]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=718559 NWA05_RS09695 WP_001202375.1 2032915..2033520(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS1]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751