Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NHB23_RS12380 Genome accession   NZ_CP102716
Coordinates   2671458..2673257 (+) Length   599 a.a.
NCBI ID   WP_005690004.1    Uniprot ID   A0A508Z3F9
Organism   Lacticaseibacillus rhamnosus strain DM065     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2666458..2678257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB23_RS12365 (NHB23_012365) - 2667406..2668095 (+) 690 WP_005690000.1 hypothetical protein -
  NHB23_RS12370 (NHB23_012370) brnQ 2668747..2670126 (+) 1380 WP_014571067.1 branched-chain amino acid transport system II carrier protein -
  NHB23_RS12375 (NHB23_012375) - 2670235..2671329 (-) 1095 WP_005685362.1 LCP family protein -
  NHB23_RS12380 (NHB23_012380) pepF 2671458..2673257 (+) 1800 WP_005690004.1 oligoendopeptidase F Regulator
  NHB23_RS12385 (NHB23_012385) - 2673254..2674135 (+) 882 WP_005690006.1 NAD(P)-dependent oxidoreductase -
  NHB23_RS12390 (NHB23_012390) - 2674132..2674980 (+) 849 WP_005690009.1 metallophosphoesterase -
  NHB23_RS12395 (NHB23_012395) - 2675093..2675890 (-) 798 WP_005685358.1 metal ABC transporter permease -
  NHB23_RS12400 (NHB23_012400) - 2675887..2676606 (-) 720 WP_005685357.1 metal ABC transporter ATP-binding protein -
  NHB23_RS12405 (NHB23_012405) - 2676771..2677115 (-) 345 WP_005690011.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67220.20 Da        Isoelectric Point: 5.4358

>NTDB_id=718547 NHB23_RS12380 WP_005690004.1 2671458..2673257(+) (pepF) [Lacticaseibacillus rhamnosus strain DM065]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYTLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDSKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAARYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLMELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=718547 NHB23_RS12380 WP_005690004.1 2671458..2673257(+) (pepF) [Lacticaseibacillus rhamnosus strain DM065]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAAGCGGCCGTCGCATTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCCGTACTTGCAGTTTTTCGACGCTTCGAGAAGGTTTACGTCTATTCAAGTTTAAAA
AGCGATCAAGATACCGGTAACGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCGTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCCTGGCGTGACACTGAAAGCTTGAAGC
CATTCGGACATTTTATCGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCCTTGATTGCAAGT
GCGGGTGATGCCTTAAATGCCAGTCACGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAATTGATTCGCTCGACTAACCGTAAATTACGCAAGG
AGGCTTTCGAGGCCCTTCTGCGTGCTTACGAAAGTTTGAAAAATACGTTTGCGCAAACGTTAAGTGGTCAAGTGAAAGCC
CATAATTTCAACGCGACGGCGCATCATTACAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTGCCGCTTTTACATCGTTATGTCGCCTTGCGCAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATACGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAAAATAAAGGCAAACGTTCAGGTGCCTATTCCGGTGGTGCTTATGATACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCCGTTGATGAACTCTATACGTTGGTTCACGAAACCGGCCACAGCGTTCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACGACCAACGAAAATCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATTCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAGGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCACTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTAACGGCC
ACCAGCATGTCACAATATTACGCCGATCTCAACGCCCGATATTATGGACCGGAAGTTGCACGCGATCCGGAAATTGCCTT
TGAATGGGCCCGCATTCCGCACTTCTATTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGTAGCGGCGAACCTGACGCGGCTGCCCGTTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTTGAACA
GCGCTTGATGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508Z3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.941

99.332

0.526