Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PSQ21_RS19580 Genome accession   NZ_CP117709
Coordinates   4454837..4455880 (-) Length   347 a.a.
NCBI ID   WP_274031921.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4449837..4460880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS19570 - 4450239..4451543 (-) 1305 WP_274031919.1 extracellular solute-binding protein -
  PSQ21_RS19575 - 4451776..4454589 (+) 2814 WP_274031920.1 glycosyl hydrolase -
  PSQ21_RS19580 cytR 4454837..4455880 (-) 1044 WP_274031921.1 LacI family DNA-binding transcriptional regulator Regulator
  PSQ21_RS19585 - 4456151..4456393 (+) 243 WP_274031922.1 hypothetical protein -
  PSQ21_RS19590 - 4456383..4456616 (+) 234 WP_274031923.1 hypothetical protein -
  PSQ21_RS19595 - 4456783..4457136 (-) 354 WP_274031924.1 PRC-barrel domain-containing protein -
  PSQ21_RS19600 - 4457357..4457527 (-) 171 WP_097966984.1 hydrophobic protein -
  PSQ21_RS19605 - 4457776..4458390 (+) 615 WP_274031925.1 Uma2 family endonuclease -
  PSQ21_RS19610 - 4458430..4459050 (-) 621 WP_274031926.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36999.79 Da        Isoelectric Point: 5.2619

>NTDB_id=718546 PSQ21_RS19580 WP_274031921.1 4454837..4455880(-) (cytR) [Streptomyces sp. MMBL 11-1]
MPEQSPGSRPTLEAVAARAGVSRATASRVVNGGDGVRQPLVDKVLKAVDELGYIPNHAARTLVTRRTGAVAVVIAEPEIR
IFSDPFFSQQIRGISKELTAHDTQLVLLLVEGPGDFDRIARYLSGGHVDGALAFSLHTDDPLPAITRRAGIPTVYGGRPS
WTADPGDQAVPYVDADNRGGARVAVRYLRDLGRERIAHIAGPPDQTSAMDRLDGYRDVLPDADPTLVAQGAFTVESGARA
MAELLERRPDVDAVFVANDLMATGALRVLRERGVAVPEQVAVVGFDDMDSVAGTTDPPLTTVNQDIEAQGRLMARLLLRG
LDRERTGNGPAPDSVITPTTLVRRASA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=718546 PSQ21_RS19580 WP_274031921.1 4454837..4455880(-) (cytR) [Streptomyces sp. MMBL 11-1]
TTGCCCGAGCAGTCCCCCGGGTCCCGGCCCACCCTGGAAGCCGTCGCGGCACGTGCGGGGGTATCGCGGGCCACCGCCTC
GCGAGTCGTCAACGGGGGCGACGGAGTCCGCCAGCCGCTCGTGGACAAGGTGCTCAAGGCGGTCGACGAGCTGGGCTACA
TCCCGAACCACGCGGCCAGGACACTGGTCACCCGGCGGACGGGCGCGGTGGCCGTGGTCATCGCGGAGCCGGAGATACGG
ATCTTCTCGGACCCCTTCTTCTCCCAGCAGATCCGGGGCATCAGCAAGGAGTTGACCGCCCACGACACCCAGCTCGTCCT
GCTGCTGGTGGAGGGCCCCGGCGACTTCGACCGGATCGCGCGGTATCTGTCCGGCGGGCACGTCGACGGGGCGCTGGCGT
TCTCGCTGCACACCGACGACCCGCTGCCCGCGATCACGCGGCGGGCGGGGATTCCCACGGTGTACGGGGGCCGGCCCAGC
TGGACCGCCGACCCCGGGGACCAGGCCGTCCCGTATGTGGACGCGGACAACCGGGGCGGCGCGCGGGTGGCCGTGCGGTA
TCTGAGGGACCTCGGGCGGGAGCGGATCGCGCACATCGCCGGACCGCCCGACCAGACCTCGGCGATGGACCGCCTCGACG
GCTACCGGGACGTCCTGCCGGACGCGGACCCGACGCTGGTCGCCCAGGGCGCGTTCACCGTGGAGAGCGGAGCGCGGGCG
ATGGCGGAGCTGCTGGAGCGGCGGCCCGACGTGGACGCGGTGTTCGTGGCGAACGACCTGATGGCCACGGGTGCTCTGCG
CGTGCTGCGGGAGCGCGGAGTGGCCGTGCCGGAGCAGGTGGCGGTCGTCGGGTTCGACGACATGGATTCGGTGGCCGGGA
CCACCGATCCGCCGCTGACCACGGTCAACCAGGACATCGAGGCGCAGGGCCGGCTGATGGCCCGTCTGCTGCTGCGCGGC
CTGGACCGGGAGCGTACGGGCAACGGCCCGGCGCCCGACTCGGTGATCACCCCGACGACACTGGTACGGCGGGCCTCCGC
CTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-346)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.817

100

0.36