Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PSQ21_RS16595 Genome accession   NZ_CP117709
Coordinates   3831196..3832326 (-) Length   376 a.a.
NCBI ID   WP_274031301.1    Uniprot ID   -
Organism   Streptomyces sp. MMBL 11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3826196..3837326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ21_RS16585 gyrB 3827989..3830058 (-) 2070 WP_274031299.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PSQ21_RS16590 - 3830495..3830998 (-) 504 WP_337961698.1 DciA family protein -
  PSQ21_RS16595 recF 3831196..3832326 (-) 1131 WP_274031301.1 DNA replication/repair protein RecF Machinery gene
  PSQ21_RS16600 gnd 3832394..3833278 (-) 885 WP_274031302.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  PSQ21_RS16605 dnaN 3833440..3834570 (-) 1131 WP_030115122.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40709.39 Da        Isoelectric Point: 7.5641

>NTDB_id=718540 PSQ21_RS16595 WP_274031301.1 3831196..3832326(-) (recF) [Streptomyces sp. MMBL 11-1]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARVNRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEGVG
PARTREELYEQLIAALVGVRKQEIERGVTLVGPHRDDLVLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGGLAGARYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=718540 PSQ21_RS16595 WP_274031301.1 3831196..3832326(-) (recF) [Streptomyces sp. MMBL 11-1]
ATGCACGTCACCCATCTCTCGTTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGGATGGGAGCGGAGCGGGCGGTGATCCGCGCGGCGGTCACCCAGGGCGAGCGTTCG
CAGCTGGTCGAGCTGGAGCTGAATCCGGGCCGCGCCAACAGGGCCCGTGTCAACCGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTCGGGATCGTACGGACCGTGCTGTTCGCGCCGGAGGACCTGGCCCTGGTCAAGGGCGACCCCGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACGGCACGTTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTGAAGCAG
CGCAACACGCTCCTCAAGTCCGCGGCGATGGCGCGCCGGCACGGTGGGCGCTCGATGGACATGTCCACGCTCGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGCTGCTGGCGCAGCGTCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGTCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGTGAGGGCGTGGGT
CCCGCGCGCACCCGCGAGGAGCTGTACGAGCAGCTGATCGCGGCGCTCGTGGGCGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACCCTGGTCGGCCCGCACCGCGACGATCTGGTGCTCGGTCTGCGGGGGATGCCGGCGAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTGCTCGACGACGTCTTCGCCGAGCTGGACGCCCGTCGCCGTGAGCGGCTGGCGGAGCTGGTGGCTCCGGGCGAGCAGGT
GCTCGTGACGGCCGCGGTGGCCGAGGACGTCCCGGGCGGGCTGGCGGGGGCACGGTACGCGGTGACCGCGGGTGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.808

97.074

0.367