Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NHG87_RS09070 Genome accession   NZ_CP102714
Coordinates   1732779..1734152 (-) Length   457 a.a.
NCBI ID   WP_057194461.1    Uniprot ID   A0AAJ6A204
Organism   Limosilactobacillus fermentum strain DM072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727779..1739152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHG87_RS09055 (NHG87_009055) - 1729410..1729979 (-) 570 WP_004562737.1 TIGR01440 family protein -
  NHG87_RS09060 (NHG87_009060) gltX 1730047..1731543 (-) 1497 WP_104877840.1 glutamate--tRNA ligase -
  NHG87_RS09065 (NHG87_009065) - 1731614..1732747 (-) 1134 WP_252772829.1 PIN/TRAM domain-containing protein -
  NHG87_RS09070 (NHG87_009070) radA 1732779..1734152 (-) 1374 WP_057194461.1 DNA repair protein RadA Machinery gene
  NHG87_RS09075 (NHG87_009075) - 1734165..1734704 (-) 540 WP_057194477.1 dUTP diphosphatase -
  NHG87_RS09080 (NHG87_009080) - 1734903..1735214 (+) 312 WP_049182693.1 GNAT family N-acetyltransferase -
  NHG87_RS09085 (NHG87_009085) - 1735417..1736667 (-) 1251 WP_252772830.1 transposase -
  NHG87_RS09090 (NHG87_009090) tnpA 1736741..1737190 (+) 450 Protein_1769 IS200/IS605 family transposase -
  NHG87_RS09095 (NHG87_009095) rpiA 1737225..1737910 (+) 686 Protein_1770 ribose-5-phosphate isomerase RpiA -
  NHG87_RS09100 (NHG87_009100) - 1737938..1738552 (+) 615 WP_057194463.1 sugar O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49415.82 Da        Isoelectric Point: 8.7358

>NTDB_id=718514 NHG87_RS09070 WP_057194461.1 1732779..1734152(-) (radA) [Limosilactobacillus fermentum strain DM072]
MAKAKTHFVCQNCGYNSPRYLGRCPNCGQWSTLVEEVEQASTPAAKNATATLTGIVARPQRIQEIDTKKTPRVKTRLNEL
NRVLGGGIVPGSLVLIGGDPGIGKSTMLLQVSGQLSVEHHKVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIR
ATIDSIQPEFVIIDSVQTMQAADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMNTRGLTEVANPSEIFLEERLKDATGSAVVVSLEGTRPILVEIQALITPTVF
GNAQRTATGLNRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLT
GEIRRVSRIEQRVAEAAKLGFKRILVPKNNLAGWNPPQDIEVVGVTTLGEALKISLG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=718514 NHG87_RS09070 WP_057194461.1 1732779..1734152(-) (radA) [Limosilactobacillus fermentum strain DM072]
ATGGCAAAAGCCAAAACACACTTTGTCTGCCAAAACTGCGGTTACAATTCACCGCGCTATTTAGGGCGGTGTCCCAATTG
TGGCCAGTGGAGTACCTTAGTTGAAGAAGTCGAGCAGGCAAGTACCCCGGCGGCTAAAAACGCTACGGCAACCTTAACCG
GGATTGTGGCCCGGCCCCAGCGAATCCAAGAAATTGACACCAAAAAAACGCCCCGGGTTAAGACCCGCTTAAATGAGTTA
AACCGGGTGCTAGGTGGCGGAATTGTACCCGGCTCGTTGGTCTTAATTGGTGGGGATCCCGGGATCGGGAAGTCCACCAT
GCTCTTACAAGTGTCGGGGCAACTGAGCGTGGAACACCACAAGGTTCTTTACGTTTCCGGGGAAGAATCGGCCTCCCAAA
TTAAATTACGGGCCCAACGCTTAGACGTTTCCGGCGAGGACTTTTATATCTACCCGGAAACCAACATGGAAGCCATCCGT
GCGACGATTGATTCCATTCAGCCCGAGTTTGTAATCATTGACTCGGTTCAGACGATGCAGGCGGCCGACGTGACCTCGGC
GATTGGGTCGGTCTCCCAAATCCGGGCGGTCACTGCCCAGTTGATGCAGATTGCCAAGGGGCAAAACATCACGGTCTTCG
TGGTTGGTCACGTCACCAAGGGTGGGGTCTTAGCCGGTCCCAAGATCTTGGAACACATGGTTGACACGGTGCTGTACTTT
GAAGGGGACCTCCACCACACCTACCGGATTTTACGGTCGGTCAAAAACCGGTTTGGGTCCACCAATGAGTTAGGGATCTT
CGAAATGAATACCCGCGGTTTGACCGAGGTCGCAAACCCCTCGGAAATCTTTTTGGAAGAGCGGCTTAAGGATGCCACCG
GGTCGGCCGTGGTCGTATCCCTGGAGGGAACCCGACCGATCCTGGTTGAAATCCAGGCCTTGATCACGCCAACCGTCTTT
GGAAACGCCCAAAGAACGGCGACGGGTTTAAACCGCAACCGGGTTTCCTTGATCATGGCGGTCCTAGAAAAACGGGCGAA
CCTGCTCTTACAAAACCAGGATGCCTACTTGAAGGCGGCCGGGGGCGTTAAGTTAGACGAGCCGGCCATCGACCTTGCGA
TCGCGGTGGCAATTGCTTCTTCTTACCGGGATAAGGGGACCCGGCCGACCGACGCCTTCGTCGGTGAAGTTGGCTTAACC
GGGGAGATCCGTCGGGTGAGCCGAATTGAACAGCGGGTGGCCGAAGCCGCTAAACTAGGCTTTAAGCGGATTTTAGTGCC
CAAAAACAATTTAGCGGGTTGGAACCCGCCGCAAGACATCGAAGTCGTGGGGGTAACGACCCTTGGCGAAGCACTTAAAA
TTTCCCTTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(64-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.991

99.125

0.674
  radA Streptococcus mitis NCTC 12261

67.77

99.125

0.672
  radA Streptococcus pneumoniae Rx1

67.77

99.125

0.672
  radA Streptococcus pneumoniae D39

67.77

99.125

0.672
  radA Streptococcus pneumoniae R6

67.77

99.125

0.672
  radA Streptococcus pneumoniae TIGR4

67.77

99.125

0.672
  radA Bacillus subtilis subsp. subtilis str. 168

63.676

100

0.637