Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SA231_RS10120 Genome accession   NZ_AP024203
Coordinates   2042525..2043676 (+) Length   383 a.a.
NCBI ID   WP_000020365.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 2037525..2048676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA231_RS10095 (SA231_19480) - 2038354..2039640 (+) 1287 WP_000664766.1 pitrilysin family protein -
  SA231_RS10100 (SA231_19490) - 2039640..2040344 (+) 705 WP_000646222.1 SDR family NAD(P)-dependent oxidoreductase -
  SA231_RS10105 (SA231_19500) - 2040449..2041276 (+) 828 WP_000214890.1 YmfK family protein -
  SA231_RS10110 (SA231_19510) - 2041295..2041687 (+) 393 WP_000859445.1 RodZ family helix-turn-helix domain-containing protein -
  SA231_RS10115 (SA231_19520) pgsA 2041721..2042299 (+) 579 WP_001025090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SA231_RS10120 (SA231_19530) cinA 2042525..2043676 (+) 1152 WP_000020365.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SA231_RS10125 (SA231_19540) recA 2043841..2044884 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  SA231_RS10130 (SA231_19550) rny 2045238..2046797 (+) 1560 WP_001050913.1 ribonuclease Y -
  SA231_RS10135 (SA231_19560) - 2047095..2047310 (-) 216 WP_000026308.1 hypothetical protein -
  SA231_RS10140 (SA231_19570) - 2047484..2048281 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43189.55 Da        Isoelectric Point: 6.4455

>NTDB_id=71848 SA231_RS10120 WP_000020365.1 2042525..2043676(+) (cinA) [Staphylococcus aureus strain SA23-1]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQVMTPNNKQQALVIEGSTVLANHHGMAPGMIVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LYRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=71848 SA231_RS10120 WP_000020365.1 2042525..2043676(+) (cinA) [Staphylococcus aureus strain SA23-1]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGTAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATAGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTTATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAACAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACTACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment