Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSR34_RS17265 Genome accession   NZ_CP117672
Coordinates   3534290..3534895 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain KW21     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3529290..3539895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR34_RS17245 (PSR34_17245) aes 3529327..3530286 (+) 960 WP_032283027.1 acetyl esterase -
  PSR34_RS17250 (PSR34_17250) hemH 3530283..3531245 (-) 963 WP_001250088.1 ferrochelatase -
  PSR34_RS17255 (PSR34_17255) adk 3531481..3532125 (-) 645 WP_001220233.1 adenylate kinase -
  PSR34_RS17260 (PSR34_17260) htpG 3532306..3534180 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  PSR34_RS17265 (PSR34_17265) recR 3534290..3534895 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PSR34_RS17270 (PSR34_17270) ybaB 3534895..3535224 (-) 330 WP_061357626.1 YbaB/EbfC family nucleoid-associated protein -
  PSR34_RS17275 (PSR34_17275) dnaX 3535277..3537208 (-) 1932 WP_219900235.1 DNA polymerase III subunit gamma/tau -
  PSR34_RS17280 (PSR34_17280) apt 3537337..3537888 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PSR34_RS17285 (PSR34_17285) ybaN 3538041..3538418 (-) 378 WP_001188905.1 DUF454 family protein -
  PSR34_RS17290 (PSR34_17290) priC 3538488..3539015 (+) 528 WP_001402074.1 primosomal replication protein N'' -
  PSR34_RS17295 (PSR34_17295) rsmS 3539029..3539190 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PSR34_RS17300 (PSR34_17300) - 3539243..3539341 (-) 99 Protein_3388 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=718473 PSR34_RS17265 WP_001195025.1 3534290..3534895(-) (recR) [Escherichia coli strain KW21]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=718473 PSR34_RS17265 WP_001195025.1 3534290..3534895(-) (recR) [Escherichia coli strain KW21]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443