Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NV952_RS14005 Genome accession   NZ_CP102694
Coordinates   2858902..2859531 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN4554     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2853902..2864531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV952_RS13990 (NV952_13955) helD 2854144..2856198 (-) 2055 WP_000420536.1 DNA helicase IV -
  NV952_RS13995 (NV952_13960) yccF 2856321..2856767 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NV952_RS14000 (NV952_13965) yccS 2856777..2858939 (+) 2163 WP_000875023.1 YccS family putative transporter -
  NV952_RS14005 (NV952_13970) sxy/tfoX 2858902..2859531 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NV952_RS14010 (NV952_13975) sulA 2859750..2860259 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NV952_RS14015 (NV952_13980) ompA 2860616..2861668 (+) 1053 WP_001361736.1 porin OmpA -
  NV952_RS14020 (NV952_13985) matP 2861744..2862196 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NV952_RS14025 (NV952_13990) ycbZ 2862382..2864142 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=718460 NV952_RS14005 WP_000839153.1 2858902..2859531(-) (sxy/tfoX) [Escherichia coli strain GN4554]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=718460 NV952_RS14005 WP_000839153.1 2858902..2859531(-) (sxy/tfoX) [Escherichia coli strain GN4554]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1