Detailed information NTG0718441

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PSR34_RS05180
• Genome accession: NZ_CP117672
• Coordinates: 1074799..1075791 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KW21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1069799..1080791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSR34_RS05150 (PSR34_05150)	ispD	1069860..1070570 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PSR34_RS05155 (PSR34_05155)	ispF	1070570..1071049 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PSR34_RS05160 (PSR34_05160)	truD	1071046..1072095 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
PSR34_RS05165 (PSR34_05165)	surE	1072076..1072837 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PSR34_RS05170 (PSR34_05170)	pcm	1072831..1073457 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PSR34_RS05175 (PSR34_05175)	nlpD	1073642..1074736 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PSR34_RS05180 (PSR34_05180)	rpoS	1074799..1075791 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PSR34_RS05185 (PSR34_05185)	ygbN	1075885..1077249 (-)	1365	WP_000104429.1	GntP family transporter	-
PSR34_RS05190 (PSR34_05190)	ygbM	1077338..1078114 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PSR34_RS05195 (PSR34_05195)	ygbL	1078119..1078757 (-)	639	WP_001278994.1	aldolase	-
PSR34_RS05200 (PSR34_05200)	otnK	1078754..1080016 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=718441 PSR34_RS05180 WP_000081550.1 1074799..1075791(+) (rpoS) [Escherichia coli strain KW21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=718441 PSR34_RS05180 WP_000081550.1 1074799..1075791(+) (rpoS) [Escherichia coli strain KW21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATTCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715