Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSP57_RS20305 Genome accession   NZ_CP117527
Coordinates   4365223..4365819 (-) Length   198 a.a.
NCBI ID   WP_003111077.1    Uniprot ID   Q02K17
Organism   Pseudomonas aeruginosa strain MF1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4360223..4370819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSP57_RS20280 (PSP57_20280) - 4360617..4360766 (-) 150 Protein_4016 hypothetical protein -
  PSP57_RS20285 (PSP57_20285) - 4360859..4362442 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  PSP57_RS20290 (PSP57_20290) - 4362439..4363326 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  PSP57_RS20295 (PSP57_20295) - 4363400..4363939 (+) 540 WP_023095858.1 CbrC family protein -
  PSP57_RS20300 (PSP57_20300) - 4363952..4365100 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  PSP57_RS20305 (PSP57_20305) recR 4365223..4365819 (-) 597 WP_003111077.1 recombination mediator RecR Machinery gene
  PSP57_RS20310 (PSP57_20310) - 4365898..4366224 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PSP57_RS20315 (PSP57_20315) dnaX 4366270..4368319 (-) 2050 Protein_4023 DNA polymerase III subunit gamma/tau -
  PSP57_RS20320 (PSP57_20320) - 4368356..4369222 (+) 867 WP_023657576.1 ABC transporter substrate-binding protein -
  PSP57_RS20330 (PSP57_20330) - 4369476..4369853 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.3332

>NTDB_id=718369 PSP57_RS20305 WP_003111077.1 4365223..4365819(-) (recR) [Pseudomonas aeruginosa strain MF1]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=718369 PSP57_RS20305 WP_003111077.1 4365223..4365819(-) (recR) [Pseudomonas aeruginosa strain MF1]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02K17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48