Detailed information NTG0718335

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PSP57_RS06985
• Genome accession: NZ_CP117527
• Coordinates: 1523188..1524192 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain MF1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1518188..1529192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSP57_RS06955 (PSP57_06955)	fghA	1518280..1519131 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
PSP57_RS06960 (PSP57_06960)	ispF	1519202..1519675 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PSP57_RS06965 (PSP57_06965)	truD	1519672..1520739 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
PSP57_RS06970 (PSP57_06970)	surE	1520727..1521476 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PSP57_RS06975 (PSP57_06975)	-	1521509..1522144 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PSP57_RS06980 (PSP57_06980)	-	1522190..1523083 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PSP57_RS06985 (PSP57_06985)	rpoS	1523188..1524192 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PSP57_RS06990 (PSP57_06990)	fdxA	1524619..1524942 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PSP57_RS06995 (PSP57_06995)	mutS	1525009..1527576 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PSP57_RS07000 (PSP57_07000)	-	1527702..1528709 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=718335 PSP57_RS06985 WP_003113871.1 1523188..1524192(+) (rpoS) [Pseudomonas aeruginosa strain MF1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=718335 PSP57_RS06985 WP_003113871.1 1523188..1524192(+) (rpoS) [Pseudomonas aeruginosa strain MF1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653