Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PS271_RS22365 Genome accession   NZ_CP117521
Coordinates   4932475..4933260 (-) Length   261 a.a.
NCBI ID   WP_030368667.1    Uniprot ID   A0A3B0BHX7
Organism   Streptomyces sp. SCA2-17     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4927475..4938260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS22355 (PS271_22295) - 4928576..4930369 (+) 1794 WP_398386988.1 IucA/IucC family protein -
  PS271_RS22360 (PS271_22300) - 4930413..4932392 (+) 1980 WP_398384058.1 ATP-dependent DNA helicase -
  PS271_RS22365 (PS271_22305) dinR/lexA 4932475..4933260 (-) 786 WP_030368667.1 transcriptional repressor LexA Regulator
  PS271_RS22370 (PS271_22310) nrdR 4933798..4934322 (+) 525 WP_398384060.1 transcriptional regulator NrdR -
  PS271_RS22375 (PS271_22315) - 4934436..4937306 (+) 2871 WP_398384062.1 vitamin B12-dependent ribonucleotide reductase -
  PS271_RS22380 (PS271_22320) - 4937407..4937823 (-) 417 WP_398384063.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28256.97 Da        Isoelectric Point: 7.4236

>NTDB_id=718310 PS271_RS22365 WP_030368667.1 4932475..4933260(-) (dinR/lexA) [Streptomyces sp. SCA2-17]
MTTTADSATITAQDRSQNRLDQAHPMNDAAMSSEGQKPARALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=718310 PS271_RS22365 WP_030368667.1 4932475..4933260(-) (dinR/lexA) [Streptomyces sp. SCA2-17]
GTGACCACCACCGCAGACAGCGCCACAATCACCGCCCAGGACCGCTCCCAGAACCGACTCGACCAGGCACACCCGATGAA
TGACGCAGCCATGAGCTCCGAGGGGCAGAAGCCCGCTCGGGCCCTCCCGGGGCGACCTCCGGGCATCCGGGCCGACAGCT
CGGGCCTCACCGACCGCCAGCGGCGGGTCATCGAAGTGATCCGGGATTCCGTCCAGCGCCGGGGCTACCCACCCTCCATG
CGGGAGATCGGCCAGGCGGTCGGGCTGTCGAGCACGTCCTCGGTGGCGCACCAGCTCATGGCGCTGGAGCGCAAGGGCTT
CCTGCGCCGGGATCCGCACCGCCCCCGCGCCTACGAGGTCCGCGGCTCGGACCAGCCCAGCTCGCAGCCCACGGACACCA
CCGGCAAGCCCGCCGCGTCCTATGTGCCGCTGGTCGGCCGGATCGCCGCGGGCGGTCCGATCCTGGCCGAGGAGTCCGTC
GAGGACGTCTTCCCGCTCCCCCGCCAACTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGAT
CGAGGCCGCCATCTGCGACGGCGACTGGGTGACGGTCCGCCGCCAGCCCGTTGCGGAGAACGGCGACATCGTGGCCGCGA
TGCTCGACGGAGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAATGCCGCCTAC
CAGCCGATCCCGGGCGATGAGGCCACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B0BHX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379