Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PS271_RS21270 Genome accession   NZ_CP117521
Coordinates   4664203..4666467 (+) Length   754 a.a.
NCBI ID   WP_398383780.1    Uniprot ID   -
Organism   Streptomyces sp. SCA2-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4659203..4671467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS21250 (PS271_21190) - 4659546..4660517 (+) 972 WP_398383775.1 thiamine-phosphate kinase -
  PS271_RS21255 (PS271_21195) thiD 4660694..4661485 (+) 792 WP_398383777.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PS271_RS21260 (PS271_21200) rpmB 4661702..4661887 (-) 186 WP_078660562.1 50S ribosomal protein L28 -
  PS271_RS21265 (PS271_21205) - 4662181..4664130 (+) 1950 WP_398383779.1 DAK2 domain-containing protein -
  PS271_RS21270 (PS271_21210) recG/mmsA 4664203..4666467 (+) 2265 WP_398383780.1 ATP-dependent DNA helicase RecG Machinery gene
  PS271_RS21275 (PS271_21215) rsmD 4666706..4667305 (+) 600 WP_398383782.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PS271_RS21280 (PS271_21220) coaD 4667302..4667811 (+) 510 WP_120753904.1 pantetheine-phosphate adenylyltransferase -
  PS271_RS21285 (PS271_21225) - 4667909..4669024 (+) 1116 WP_398383784.1 cell division initiation protein -
  PS271_RS21290 (PS271_21230) - 4669239..4669835 (+) 597 WP_194960394.1 YceD family protein -
  PS271_RS21295 (PS271_21235) rpmF 4669838..4670011 (+) 174 WP_015657589.1 50S ribosomal protein L32 -
  PS271_RS21300 (PS271_21240) rnc 4670031..4670882 (+) 852 WP_398383786.1 ribonuclease III -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 81181.66 Da        Isoelectric Point: 6.0249

>NTDB_id=718304 PS271_RS21270 WP_398383780.1 4664203..4666467(+) (recG/mmsA) [Streptomyces sp. SCA2-17]
MGPVPALHEPLKKILGGSTAKVMAEHLDLHTAGDLLHHYPRRYAERGELTRLADLPLDEHVTVVAQVAKAAMKTFNHGKG
VRLEVVVTDGSGSLTLVFFGRGAYAREKELIPGRRGMFAGKVSVFNRTRQLLHPDYELLDRDSGADAAEAFAGRLLPIYP
ACKQFQSWKLTKAVDTLLDLFEAEQWEGLTDPLPPSLRDGRGLAELPDAFRKVHRPRTKADIEDARARLKWDEAFVLQVA
LARRRHADSQLPAVARKPVAGGILDAFDAKLPFALTEGQRTVSAEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLGVV
DAGGQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHGTKVVLLTGSMGTAARRQALLDLVTGEAGIVIGTHALIE
DKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAK
DKPHFLARTWERVREEIEGGHQAYVVCPRIGDDLGEENGTKAAAKRGSGGSGSGGTKGDAEQGAEGDGERRPPLAVVDVA
EQLTKGPLKGLRVEVLHGRMQPEAKDDVMRRFAAGEVDVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGR
GSAPGLCLLVTDAPEASPARARLAAVAGTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEIIAAAREEAA
AVVAADPELEGLPELRTALDALLDEEREQYLDKG

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=718304 PS271_RS21270 WP_398383780.1 4664203..4666467(+) (recG/mmsA) [Streptomyces sp. SCA2-17]
ATGGGACCCGTGCCCGCGCTTCATGAACCCCTGAAGAAGATCCTCGGCGGCAGCACCGCGAAGGTGATGGCCGAGCACCT
CGACCTGCACACGGCCGGCGATCTGCTGCACCACTACCCGCGCCGCTACGCCGAGCGCGGTGAGCTGACCCGCCTCGCGG
ACCTGCCGCTGGACGAGCACGTCACCGTCGTCGCCCAGGTCGCCAAAGCCGCCATGAAGACCTTCAACCACGGCAAGGGC
GTCCGCCTGGAAGTCGTGGTCACCGACGGCAGCGGCTCCCTGACGCTCGTCTTCTTCGGCCGCGGCGCCTACGCGCGGGA
GAAGGAGCTGATCCCCGGCCGCCGCGGCATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCACCCGCCAGCTCCTCCACC
CCGACTACGAGCTCCTGGACCGCGACAGCGGAGCCGACGCCGCGGAGGCCTTCGCGGGCCGCCTGCTGCCGATCTACCCC
GCCTGCAAGCAGTTCCAGTCGTGGAAGCTCACCAAGGCCGTCGACACCCTGCTGGACCTCTTCGAGGCCGAGCAGTGGGA
GGGCCTCACCGACCCGCTGCCCCCGTCCCTGCGCGACGGCCGCGGCCTCGCGGAGCTCCCCGACGCCTTCCGCAAGGTCC
ACCGGCCCCGCACCAAGGCCGACATCGAGGACGCCAGGGCCCGCCTGAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCT
CTCGCCCGCCGCCGGCACGCCGACTCCCAGCTGCCCGCCGTCGCCCGCAAGCCCGTGGCCGGCGGCATCCTCGACGCCTT
CGACGCCAAGCTGCCCTTCGCCCTCACCGAGGGCCAGCGCACCGTCTCCGCGGAGATCTTCGACGACCTGGCCACCGAGC
ACCCCATGCACCGCCTCCTCCAGGGAGAGGTGGGCTCCGGCAAGACCATGGTGGCGCTGCGCGCCATGCTCGGCGTCGTC
GACGCGGGCGGCCAGGCCGCCATGCTCGCCCCCACCGAAGTGCTCGCCCAGCAGCACCACCGCTCCGTCGTCGAGATGAT
GGGGGAGCTCGCCGAGGGCGGCATGCTCGGCGGCGCTGAGCACGGCACCAAGGTCGTGCTGCTCACGGGCTCCATGGGGA
CGGCGGCCCGGCGGCAGGCGCTGCTCGACCTCGTCACCGGCGAGGCCGGCATCGTCATCGGCACCCACGCCCTCATCGAG
GACAAGGTGCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGGGACGCCCT
CCGCTCCAAGGGCAAGCAACCGCCGCACCTCCTGGTGATGACCGCGACCCCCATCCCGCGCACCGTCGCCATGACCGTCT
TCGGCGACCTGGAGACCTCCGTCCTGGACCAGCTGCCCGCCGGCCGCTCGCCCATCGCCACCCACGTGGTGCCCGCGAAG
GACAAGCCCCACTTCCTGGCGCGCACCTGGGAGCGGGTCCGCGAGGAGATCGAGGGCGGGCACCAGGCGTACGTGGTCTG
CCCCCGCATCGGCGACGACCTGGGGGAGGAGAACGGGACCAAGGCGGCCGCGAAGCGGGGCTCCGGTGGTTCCGGCTCCG
GCGGCACCAAGGGCGACGCTGAGCAAGGCGCTGAAGGGGACGGTGAGCGGCGTCCGCCCCTCGCCGTCGTGGATGTCGCC
GAGCAGCTCACCAAGGGGCCTCTGAAGGGGCTCCGCGTGGAGGTGCTGCACGGCCGCATGCAGCCCGAGGCGAAAGACGA
CGTGATGCGCCGCTTCGCCGCCGGCGAGGTGGACGTCCTGGTCGCCACGACCGTCATCGAGGTCGGTGTGAACGTGCCCA
ACTCCACCGTCATGGTGATCATGGATGCGGACCGGTTCGGGGTCTCCCAGCTCCACCAGCTCCGCGGCCGCGTCGGGCGC
GGCTCCGCCCCGGGCCTGTGCCTGCTCGTCACCGACGCCCCCGAGGCGAGCCCCGCCCGCGCCCGCCTCGCCGCCGTCGC
GGGCACGCTGGACGGCTTCGAGCTGTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGT
CCGGCGTGCGCTCGTCCCTGCGCATGCTCGCCGTCATCGACGACGAGGAGATCATCGCTGCGGCCCGCGAAGAGGCCGCC
GCGGTCGTCGCCGCCGACCCGGAGCTGGAGGGGCTCCCCGAGCTGCGCACCGCCCTGGACGCCCTCCTGGACGAGGAGCG
CGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(569-641)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(669-730)

DEAD/DEAH box helicase (DEAD)

(298-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

35.837

100

0.361
  recG/mmsA Streptococcus pneumoniae R36A

35.837

100

0.361