Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PS271_RS16165 Genome accession   NZ_CP117521
Coordinates   3580002..3581900 (+) Length   632 a.a.
NCBI ID   WP_398386882.1    Uniprot ID   -
Organism   Streptomyces sp. SCA2-17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575002..3586900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS16145 (PS271_16105) - 3575526..3576239 (-) 714 WP_398382545.1 DUF2993 domain-containing protein -
  PS271_RS16150 (PS271_16110) - 3576350..3577717 (-) 1368 WP_398382546.1 hypothetical protein -
  PS271_RS16155 (PS271_16115) - 3577728..3578042 (-) 315 WP_356284443.1 MoaD/ThiS family protein -
  PS271_RS16160 (PS271_16120) rcrP 3578158..3579891 (+) 1734 WP_398382547.1 ABC transporter ATP-binding protein Regulator
  PS271_RS16165 (PS271_16125) rcrQ 3580002..3581900 (+) 1899 WP_398386882.1 ABC transporter ATP-binding protein Regulator
  PS271_RS16170 (PS271_16130) - 3582132..3582995 (-) 864 WP_398382548.1 alpha/beta hydrolase family protein -
  PS271_RS16175 (PS271_16135) - 3583260..3584036 (+) 777 WP_398382549.1 response regulator transcription factor -
  PS271_RS16180 (PS271_16140) - 3584061..3585086 (+) 1026 WP_398382550.1 LacI family DNA-binding transcriptional regulator -
  PS271_RS16185 (PS271_16145) - 3585091..3585318 (-) 228 WP_398382551.1 response regulator transcription factor -
  PS271_RS16190 (PS271_16150) - 3585405..3585662 (-) 258 WP_398382552.1 hypothetical protein -
  PS271_RS16195 (PS271_16155) - 3585828..3586808 (+) 981 WP_398382553.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 68223.47 Da        Isoelectric Point: 5.5987

>NTDB_id=718287 PS271_RS16165 WP_398386882.1 3580002..3581900(+) (rcrQ) [Streptomyces sp. SCA2-17]
MGGQPTERSMDFAGSAKRLLGTLRPERALITVALVMCVASVALSVIGPKILGRATDLIFAGVVGKKFPDGITKAEAVERM
RQQGNGTVADLLGSVGFTPGRGIDFDAVGEVLLWVLLIYVAASLFGLVQARIATTVVQRAVFRLRRDVEEKLGRLPLSYF
DRQPRGEVLSRATNDIDNIAQTLQQTMSQIVTSLLTITGVLAVMFWISWLLALVALVTVPVSVVVATKIGKRAQPQFVAQ
WKTTGKLNAHIEEMYTGHALVKVFGREKESAEIFRKENEDLFQAGFKAQFISGVIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFVQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDADEQSADPADAPKPGRVHGEVSFEKVSFRYEPD
KPLIEDLSLTVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVGGGRITLDGTDIAAMSREELRSHIGMVLQDTWLFGGTIAD
NIAYGAPAGTSQDKIVEAAKATHVDRFVRTLPDGYDTVIDDEGSNVSVGEKQLITIARAFLAEPEILVLDEATSSVDTRT
EVLIQQAMGRLRTGRTSFVIAHRLSTIRDADVILVMESGRIVEQGTHDSLLSAGGAYARLYEAQFAEPAVEA

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=718287 PS271_RS16165 WP_398386882.1 3580002..3581900(+) (rcrQ) [Streptomyces sp. SCA2-17]
ATGGGCGGCCAGCCCACCGAGCGGTCCATGGACTTCGCCGGGTCCGCCAAGCGGCTGCTGGGCACCCTCAGACCCGAGCG
GGCCCTGATCACCGTGGCGCTCGTCATGTGCGTCGCGAGCGTCGCCCTGTCCGTCATCGGCCCGAAGATCCTCGGCCGGG
CCACCGACCTGATCTTCGCGGGCGTCGTCGGGAAGAAGTTCCCCGACGGCATCACCAAGGCCGAGGCCGTCGAGCGGATG
CGGCAGCAGGGCAACGGCACCGTCGCCGACCTGCTCGGCTCGGTCGGCTTCACCCCCGGCCGCGGCATCGACTTCGACGC
CGTGGGCGAGGTGCTGCTGTGGGTCCTGCTGATCTACGTCGCGGCGTCCCTGTTCGGGCTCGTCCAGGCGCGGATCGCCA
CCACCGTCGTCCAGCGCGCCGTCTTCCGGCTGCGCCGGGACGTCGAGGAGAAGCTCGGCCGGCTGCCGCTCAGCTACTTC
GACCGGCAGCCGCGCGGCGAGGTGCTCTCCCGCGCCACGAACGACATCGACAACATCGCCCAGACGCTCCAGCAGACCAT
GAGCCAGATCGTCACGTCACTGCTGACGATCACGGGTGTGCTGGCCGTGATGTTCTGGATCTCCTGGCTGCTCGCCCTGG
TCGCGCTGGTCACCGTCCCGGTGTCCGTCGTCGTCGCCACGAAGATAGGCAAGCGGGCGCAGCCGCAGTTCGTCGCCCAG
TGGAAGACGACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCGCTGGTGAAGGTCTTCGGCCGCGA
GAAGGAGTCCGCGGAGATCTTCCGCAAGGAGAACGAGGACCTCTTCCAGGCCGGCTTCAAGGCCCAGTTCATCTCGGGCG
TCATCCAGCCCGCGATGATGTTCATAGGCAACCTCAACTACGTGCTCGTCGCCGTCGTCGGCGGCCTGCGGGTCGCCTCC
GGCGCGCTGTCCATCGGTGACGTGCAGGCCTTCGTGCAGTACTCGCGCCAGTTCAGCCAGCCGCTCACGCAGGTGGCCTC
CATGGCCAACCTCGTGCAGTCCGGCGTCGCCTCCGCCGAGCGCGTCTTCGAGCTGCTCGACGCCGACGAGCAGTCGGCGG
ACCCGGCGGACGCCCCGAAGCCGGGCCGCGTGCACGGCGAGGTGTCCTTCGAGAAGGTCTCCTTCCGCTACGAGCCGGAC
AAGCCGCTCATCGAGGACCTCTCGCTGACCGTGCGGCCCGGCCAGACCGTGGCCATCGTCGGCCCGACCGGCGCCGGCAA
GACCACGCTGGTCAACCTGCTCATGCGGTTCTACGAGGTGGGCGGCGGCCGCATCACCCTCGACGGGACCGACATCGCCG
CCATGTCGCGGGAGGAGCTCCGCTCCCACATCGGCATGGTGCTCCAGGACACGTGGCTCTTCGGCGGCACGATCGCGGAC
AACATCGCCTACGGGGCGCCCGCCGGCACCTCGCAGGACAAGATCGTGGAGGCGGCGAAGGCCACGCACGTCGACCGCTT
CGTGCGGACGCTGCCCGACGGCTACGACACCGTCATCGACGACGAGGGCTCCAACGTCAGCGTCGGCGAGAAGCAGCTCA
TCACCATCGCCCGGGCGTTCCTGGCCGAGCCGGAGATCCTCGTCCTGGACGAGGCGACGAGCTCCGTCGACACCCGTACG
GAGGTCCTCATCCAGCAGGCGATGGGCCGGCTGCGCACGGGGCGCACGAGCTTCGTGATCGCGCACCGGCTGTCCACGAT
CCGCGACGCGGACGTCATCCTCGTGATGGAGTCGGGCCGCATCGTGGAGCAGGGCACGCACGACAGTCTGCTGTCGGCGG
GCGGCGCGTACGCGCGCCTCTACGAGGCGCAGTTCGCGGAGCCGGCCGTGGAGGCGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(31-342)

ABC transporter (ABC_tran)

(405-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.626

97.31

0.405