Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PS271_RS16160 Genome accession   NZ_CP117521
Coordinates   3578158..3579891 (+) Length   577 a.a.
NCBI ID   WP_398382547.1    Uniprot ID   -
Organism   Streptomyces sp. SCA2-17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573158..3584891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS271_RS16130 (PS271_16090) - 3573512..3573799 (-) 288 WP_398382542.1 DUF3099 domain-containing protein -
  PS271_RS16135 (PS271_16095) - 3573923..3574210 (-) 288 WP_398382543.1 DUF1416 domain-containing protein -
  PS271_RS16140 (PS271_16100) - 3574242..3575084 (-) 843 WP_398382544.1 sulfurtransferase -
  PS271_RS16145 (PS271_16105) - 3575526..3576239 (-) 714 WP_398382545.1 DUF2993 domain-containing protein -
  PS271_RS16150 (PS271_16110) - 3576350..3577717 (-) 1368 WP_398382546.1 hypothetical protein -
  PS271_RS16155 (PS271_16115) - 3577728..3578042 (-) 315 WP_356284443.1 MoaD/ThiS family protein -
  PS271_RS16160 (PS271_16120) rcrP 3578158..3579891 (+) 1734 WP_398382547.1 ABC transporter ATP-binding protein Regulator
  PS271_RS16165 (PS271_16125) rcrQ 3580002..3581900 (+) 1899 WP_398386882.1 ABC transporter ATP-binding protein Regulator
  PS271_RS16170 (PS271_16130) - 3582132..3582995 (-) 864 WP_398382548.1 alpha/beta hydrolase family protein -
  PS271_RS16175 (PS271_16135) - 3583260..3584036 (+) 777 WP_398382549.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62144.16 Da        Isoelectric Point: 4.9769

>NTDB_id=718286 PS271_RS16160 WP_398382547.1 3578158..3579891(+) (rcrP) [Streptomyces sp. SCA2-17]
MLVRLSRAYLKPYSSSIALIVLLQLVQTLATLYLPSLNADIIDNGVVKGDTGYILSLGGGMLAVTLAQIVCAIGATYFGA
RTAMAVGRDLRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQIQLLVLMAFTLMVSAPIMCVGGILMALDQDVPLSAL
LLVIVPVLGVIVSLIIWRMRPVFRGVQDRIDTVNRVLREQITGIRVIRAFVRDTHERERFDGANAELMDVSLRAGRLMSL
MFPSVMLVVNLSSVAVLWFGGHRIESGDMEIGALTAFLSYLMQILMAVMMATFMFMMVPRAEVCAERVQEVLATDSSVVP
PVSPVTELRGGGHLELSGVEFRYPGAEEPVLKDVSLVARPGEITAVIGSTGSGKSTLLGLVPRLFDATAGTVTVGGVDVR
ELDPARSAEAIGLVPQKPYLFSGTVASNLRYGRPDATDEELWEALETAQARDFVASMEGGLEAPIAQGGTNVSGGQRQRL
AIARALVRKPDIYLFDDSFSALDYATDARLRAALARETGNATVVIVAQRVSTIREADRIVVLDEGRVVGTGTHGELMAGN
ETYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=718286 PS271_RS16160 WP_398382547.1 3578158..3579891(+) (rcrP) [Streptomyces sp. SCA2-17]
GTGCTGGTCCGACTATCACGGGCGTATCTGAAGCCCTACTCCTCATCGATCGCGCTGATCGTGCTCCTGCAGCTCGTCCA
GACGCTTGCCACGCTCTACCTACCCTCACTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTGTCCCTCGGCGGCGGGATGCTGGCGGTCACCCTCGCCCAGATCGTCTGCGCGATCGGTGCGACGTACTTCGGTGCC
CGGACCGCGATGGCGGTCGGCCGCGACCTGCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCGCGCGAAATGGG
GCACTTCGGCGCCCCCTCCCTGATCACCCGCACCACCAACGACGTGCAGCAGATCCAGCTGCTCGTCCTGATGGCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCCTGATGGCGCTCGACCAGGACGTGCCGCTGTCCGCCCTG
CTGCTGGTCATCGTGCCGGTCCTCGGCGTGATCGTCTCGCTGATCATCTGGCGGATGCGACCGGTCTTCCGCGGCGTGCA
GGACCGGATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACA
CCCACGAGCGGGAACGTTTCGACGGCGCGAACGCCGAGCTGATGGACGTCTCGCTCAGGGCCGGCCGGCTGATGTCGCTG
ATGTTCCCGTCCGTGATGCTGGTCGTGAACCTCTCCTCCGTCGCCGTGCTGTGGTTCGGCGGTCACCGCATCGAGAGCGG
CGACATGGAGATCGGCGCGCTGACGGCCTTCCTCAGCTATCTGATGCAGATCCTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGCCACCGACTCCAGCGTGGTGCCG
CCGGTCAGCCCGGTCACCGAACTGCGCGGCGGCGGGCACCTGGAGCTCAGCGGCGTCGAGTTCCGCTACCCGGGCGCGGA
GGAGCCGGTCCTCAAGGACGTCTCGCTCGTCGCCCGGCCCGGTGAGATCACGGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTCCCGCGGCTGTTCGACGCGACCGCCGGAACGGTCACCGTGGGCGGCGTCGACGTGCGC
GAGCTCGACCCGGCCCGCTCCGCCGAGGCCATCGGCCTCGTCCCGCAGAAGCCCTACCTGTTCTCCGGGACCGTCGCCTC
GAACCTCCGCTACGGGCGCCCCGACGCGACCGACGAGGAGCTGTGGGAGGCGCTGGAGACGGCGCAGGCCCGCGACTTCG
TCGCGAGCATGGAGGGCGGCCTGGAGGCGCCGATCGCGCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCCCGCGCCCTGGTCCGCAAGCCGGACATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCCGGCTGCGGGCCGCGCTGGCCCGCGAGACGGGGAACGCCACGGTCGTCATCGTCGCCCAGCGCGTCTCCACGATCC
GTGAGGCCGACCGGATCGTCGTCCTGGACGAGGGCCGCGTCGTCGGCACCGGCACCCACGGCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGGAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.138

100

0.393