Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSR65_RS20220 Genome accession   NZ_CP117469
Coordinates   4145303..4145908 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B-ZidR     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4140303..4150908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR65_RS20200 (PSR65_20185) aes 4140340..4141299 (+) 960 WP_000801849.1 acetyl esterase -
  PSR65_RS20205 (PSR65_20190) hemH 4141296..4142258 (-) 963 WP_001250117.1 ferrochelatase -
  PSR65_RS20210 (PSR65_20195) adk 4142494..4143138 (-) 645 WP_001220233.1 adenylate kinase -
  PSR65_RS20215 (PSR65_20200) htpG 4143319..4145193 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PSR65_RS20220 (PSR65_20205) recR 4145303..4145908 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PSR65_RS20225 (PSR65_20210) ybaB 4145908..4146237 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PSR65_RS20230 (PSR65_20215) dnaX 4146290..4148221 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PSR65_RS20235 (PSR65_20220) apt 4148350..4148901 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PSR65_RS20240 (PSR65_20225) ybaN 4149054..4149431 (-) 378 WP_001188905.1 DUF454 family protein -
  PSR65_RS20245 (PSR65_20230) priC 4149501..4150028 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  PSR65_RS20250 (PSR65_20235) rsmS 4150042..4150203 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=718238 PSR65_RS20220 WP_001195025.1 4145303..4145908(-) (recR) [Escherichia coli strain B-ZidR]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=718238 PSR65_RS20220 WP_001195025.1 4145303..4145908(-) (recR) [Escherichia coli strain B-ZidR]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443