Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PSR65_RS17370 Genome accession   NZ_CP117469
Coordinates   3574967..3575596 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B-ZidR     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569967..3580596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR65_RS17355 (PSR65_17345) helD 3570209..3572263 (-) 2055 WP_001295354.1 DNA helicase IV -
  PSR65_RS17360 (PSR65_17350) yccF 3572386..3572832 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PSR65_RS17365 (PSR65_17355) yccS 3572842..3575004 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PSR65_RS17370 (PSR65_17360) sxy/tfoX 3574967..3575596 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PSR65_RS17375 (PSR65_17365) sulA 3575815..3576324 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PSR65_RS17380 (PSR65_17370) ompA 3576681..3577721 (+) 1041 WP_000750416.1 porin OmpA -
  PSR65_RS17385 (PSR65_17375) matP 3577797..3578249 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PSR65_RS17390 (PSR65_17380) ycbZ 3578435..3580195 (+) 1761 WP_000156531.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=718231 PSR65_RS17370 WP_000839153.1 3574967..3575596(-) (sxy/tfoX) [Escherichia coli strain B-ZidR]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=718231 PSR65_RS17370 WP_000839153.1 3574967..3575596(-) (sxy/tfoX) [Escherichia coli strain B-ZidR]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1