Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NVV61_RS06475 Genome accession   NZ_CP102627
Coordinates   1292192..1293883 (+) Length   563 a.a.
NCBI ID   WP_003766795.1    Uniprot ID   A0AB73H4H6
Organism   Listeria innocua strain F4078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287192..1298883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV61_RS06450 (NVV61_06450) - 1287343..1288224 (+) 882 WP_010991515.1 polyprenyl synthetase family protein -
  NVV61_RS06455 (NVV61_06455) - 1288423..1288623 (+) 201 WP_003719639.1 cold-shock protein -
  NVV61_RS06460 (NVV61_06460) dxs 1288788..1290708 (+) 1921 Protein_1270 1-deoxy-D-xylulose-5-phosphate synthase -
  NVV61_RS06465 (NVV61_06465) - 1290705..1291529 (+) 825 WP_003771733.1 TlyA family RNA methyltransferase -
  NVV61_RS06470 (NVV61_06470) ahrC 1291720..1292169 (+) 450 WP_003766793.1 transcriptional regulator AhrC/ArgR -
  NVV61_RS06475 (NVV61_06475) recN 1292192..1293883 (+) 1692 WP_003766795.1 DNA repair protein RecN Machinery gene
  NVV61_RS06480 (NVV61_06480) - 1294013..1294879 (+) 867 WP_010991518.1 phosphate acyltransferase -
  NVV61_RS06485 (NVV61_06485) buk 1295016..1296083 (+) 1068 WP_185589993.1 butyrate kinase -
  NVV61_RS06490 (NVV61_06490) lpdA 1296097..1297524 (+) 1428 WP_033533055.1 dihydrolipoyl dehydrogenase -
  NVV61_RS06495 (NVV61_06495) - 1297549..1298544 (+) 996 WP_003762136.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63582.35 Da        Isoelectric Point: 5.2644

>NTDB_id=718214 NVV61_RS06475 WP_003766795.1 1292192..1293883(+) (recN) [Listeria innocua strain F4078]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=718214 NVV61_RS06475 WP_003766795.1 1292192..1293883(+) (recN) [Listeria innocua strain F4078]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGCTTATTTGCCCTAGCAGAAGATAATCTTGCCTGCCGTAATGCA
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGTATTAACGGAAAACTAGTAACTACGGTGTTGCTACGTCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AACACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCTGATAAAATTAAACCCGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCAAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCGAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACAGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAGATGGAAGCGGCTGCGAGTATTCATACTGATTATAAAGC
AGTTAGTGAAGCAATATCATCCAGTTACTATATGCTTGAAGACAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTAAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGTGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATCAGCC
GTATGATTGCTGGGATAGAAGTGACTGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531