Detailed information NTG0718207

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PSR65_RS08910
• Genome accession: NZ_CP117469
• Coordinates: 1859618..1860610 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B-ZidR
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1854618..1865610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSR65_RS08880 (PSR65_08870)	ispD	1854679..1855389 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PSR65_RS08885 (PSR65_08875)	ispF	1855389..1855868 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PSR65_RS08890 (PSR65_08880)	truD	1855865..1856914 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PSR65_RS08895 (PSR65_08885)	surE	1856895..1857656 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PSR65_RS08900 (PSR65_08890)	pcm	1857650..1858276 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PSR65_RS08905 (PSR65_08895)	nlpD	1858461..1859555 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PSR65_RS08910 (PSR65_08900)	rpoS	1859618..1860610 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PSR65_RS08915 (PSR65_08905)	ygbN	1860704..1862068 (-)	1365	WP_000104459.1	GntP family transporter	-
PSR65_RS08920 (PSR65_08910)	ygbM	1862157..1862933 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
PSR65_RS08925 (PSR65_08915)	ygbL	1862938..1863576 (-)	639	WP_001278994.1	aldolase	-
PSR65_RS08930 (PSR65_08920)	otnK	1863573..1864835 (-)	1263	WP_000590371.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=718207 PSR65_RS08910 WP_000081550.1 1859618..1860610(+) (rpoS) [Escherichia coli strain B-ZidR]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=718207 PSR65_RS08910 WP_000081550.1 1859618..1860610(+) (rpoS) [Escherichia coli strain B-ZidR]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715