Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RG805_RS05590 Genome accession   NZ_CP102626
Coordinates   1096095..1097786 (+) Length   563 a.a.
NCBI ID   WP_003766795.1    Uniprot ID   A0AB73H4H6
Organism   Listeria innocua strain 2012L-5520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091095..1102786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG805_RS05565 (MXK52_05560) - 1091245..1092126 (+) 882 WP_003766784.1 polyprenyl synthetase family protein -
  RG805_RS05570 (MXK52_05565) - 1092325..1092525 (+) 201 WP_003719639.1 cold-shock protein -
  RG805_RS05575 (MXK52_05570) dxs 1092691..1094611 (+) 1921 Protein_1093 1-deoxy-D-xylulose-5-phosphate synthase -
  RG805_RS05580 (MXK52_05575) - 1094608..1095432 (+) 825 WP_003766791.1 TlyA family RNA methyltransferase -
  RG805_RS05585 (MXK52_05580) ahrC 1095623..1096072 (+) 450 WP_003766793.1 transcriptional regulator AhrC/ArgR -
  RG805_RS05590 (MXK52_05585) recN 1096095..1097786 (+) 1692 WP_003766795.1 DNA repair protein RecN Machinery gene
  RG805_RS05595 (MXK52_05590) - 1097916..1098782 (+) 867 WP_003766796.1 phosphate acyltransferase -
  RG805_RS05600 (MXK52_05595) buk 1098919..1099986 (+) 1068 WP_003766798.1 butyrate kinase -
  RG805_RS05605 (MXK52_05600) lpdA 1100000..1101427 (+) 1428 WP_003766800.1 dihydrolipoyl dehydrogenase -
  RG805_RS05610 (MXK52_05605) - 1101452..1102447 (+) 996 WP_003766802.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63582.35 Da        Isoelectric Point: 5.2644

>NTDB_id=718169 RG805_RS05590 WP_003766795.1 1096095..1097786(+) (recN) [Listeria innocua strain 2012L-5520]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAATTLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=718169 RG805_RS05590 WP_003766795.1 1096095..1097786(+) (recN) [Listeria innocua strain 2012L-5520]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAACTGCAAGGTTTGTTTGCCTTAGCAGAAGATAATCTTGCCTGCCGAAATGCG
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGCATTAACGGAAAACTAGTAACTACGGTATTGCTACGCCAAATCGGTTCTAAATTAATAGATATTCATAGTCAACATG
AGCACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCGGATAAAATTAAACCTGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGACTCGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCTAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAGATGGAAGCAGCCGCGAGTATTCATACGGATTATAAAGC
AGTTAGTGAGGCAATATCATCCAGTTACTATATGCTTGAAGATAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAGCTGACGGATAGTGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTCACTGACATCCGCAAAAAAGCAG
CAACCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAACTATATATGGAAAAAGCTATTTTCAGTGTTCACTTTGAG
TCTGACAAAACAGAATTAACGGAATCAGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAGCCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACCATTTTTTCAAGACATCAAG
GCATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTCGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCCAATCACCATTACTACAT
CACAAAAAAAGTGCAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATTAGCC
GTATGATTGCTGGGATAGAAGTGACTGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCTGAAAAAGTAAAA
CAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531