Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NT239_RS11070 Genome accession   NZ_CP102611
Coordinates   2379148..2380317 (-) Length   389 a.a.
NCBI ID   WP_373974175.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374148..2385317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS11035 (NT239_11030) - 2374840..2375079 (-) 240 WP_373974168.1 hypothetical protein -
  NT239_RS11040 (NT239_11035) - 2375069..2375854 (+) 786 WP_373974169.1 threonine/serine exporter ThrE family protein -
  NT239_RS11045 (NT239_11040) - 2375866..2376339 (+) 474 WP_373974170.1 threonine/serine exporter family protein -
  NT239_RS11050 (NT239_11045) - 2376396..2376932 (+) 537 WP_373974171.1 hypothetical protein -
  NT239_RS11055 (NT239_11050) ftsX 2377009..2377911 (-) 903 WP_373974172.1 permease-like cell division protein FtsX -
  NT239_RS11060 (NT239_11055) ftsE 2377924..2378577 (-) 654 WP_373974173.1 cell division ATP-binding protein FtsE -
  NT239_RS11065 (NT239_11060) - 2378552..2379130 (-) 579 WP_373974174.1 GNAT family N-acetyltransferase -
  NT239_RS11070 (NT239_11065) pilA 2379148..2380317 (-) 1170 WP_373974175.1 signal recognition particle-docking protein FtsY Machinery gene
  NT239_RS11075 (NT239_11070) rsmD 2380384..2380968 (+) 585 WP_373974176.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NT239_RS11080 (NT239_11075) - 2381044..2381295 (+) 252 WP_373974177.1 YfhL family 4Fe-4S dicluster ferredoxin -
  NT239_RS11085 (NT239_11080) - 2381435..2382496 (+) 1062 WP_373974178.1 tetratricopeptide repeat protein -
  NT239_RS11090 (NT239_11085) - 2382566..2383318 (-) 753 WP_373974179.1 DedA family protein -
  NT239_RS11095 (NT239_11090) - 2383452..2385080 (-) 1629 WP_373974180.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41528.50 Da        Isoelectric Point: 5.2079

>NTDB_id=718153 NT239_RS11070 WP_373974175.1 2379148..2380317(-) (pilA) [Chitinibacter sp. SCUT-21]
MFSFFKKKKPVETVAEQDLSPAQPEVATGTAAETEAISSPNTETPAAPSAVAPEVLPSTPEPAKAAEQYIETDPARLEPV
AQPQEKPKLSWTERLKLGLAKTRDKLGKSLASVFGGGQIDEDLYDELETVLLTADMGVDATQHLLKDVRERVSLKGLKDP
QELKGALKDSLVELIEPLQVPLNVDGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLVVWG
ERNGVHVIAQESGDAAAVAFDAVNSAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQKADPTGPHEVLLVLDANTGQ
NALAQTKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGETIDDLRPFNAREYINALFE

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=718153 NT239_RS11070 WP_373974175.1 2379148..2380317(-) (pilA) [Chitinibacter sp. SCUT-21]
ATGTTTAGTTTTTTCAAAAAAAAGAAGCCCGTTGAAACCGTAGCGGAGCAAGATTTAAGCCCAGCGCAGCCAGAAGTTGC
CACGGGCACCGCTGCTGAAACCGAAGCGATCAGCAGCCCAAACACTGAAACACCCGCTGCACCAAGCGCAGTAGCACCAG
AGGTATTGCCCTCCACGCCAGAACCAGCAAAGGCTGCAGAGCAATACATCGAGACCGACCCAGCTCGCCTTGAGCCTGTG
GCGCAGCCGCAAGAAAAACCCAAGCTATCGTGGACCGAGCGCCTGAAACTGGGCTTGGCGAAAACGCGCGATAAATTGGG
TAAAAGTTTGGCCAGCGTGTTTGGCGGCGGGCAAATCGACGAAGATTTGTACGACGAACTCGAAACCGTGCTGCTGACCG
CCGATATGGGCGTGGATGCAACGCAACATTTGCTCAAAGACGTGCGCGAGCGCGTGTCACTGAAAGGGTTGAAAGATCCG
CAAGAACTGAAAGGCGCGTTGAAAGACAGCTTGGTTGAATTGATCGAGCCGTTGCAAGTGCCATTGAATGTCGACGGTCA
CAAGCCGTTTATTTTGATGGTCGCCGGTGTCAACGGTGCGGGCAAAACGACGTCGATTGGTAAACTCGCCAAATACTTCC
AAAGCCAAGGCAAGAGCGTTTTGCTGGCGGCGGGCGACACGTTCCGCGCCGCAGCGCGTGAGCAGCTGGTGGTGTGGGGC
GAGCGCAATGGCGTGCACGTGATCGCGCAAGAATCGGGCGACGCGGCGGCGGTGGCGTTTGACGCAGTGAATTCGGCCAA
AGCGCGCGGCATCGACGTGGTGATTGTCGACACTGCAGGTCGTTTGCCAACGCAATTGCATTTGATGGAAGAAATCAAAA
AAGTAAAACGTGTGGTGCAAAAAGCCGACCCAACTGGCCCGCACGAAGTGCTGTTGGTGCTCGATGCGAACACTGGCCAG
AACGCCTTGGCGCAAACCAAATCGTTTGACGATGCGTTAGGCCTGACCGGTTTGGTATTGACCAAGCTCGACGGCACAGC
CAAAGGCGGCGTGATTGCTGCCATTGCCAAAAATCGCCCGGTGCCATTACGCTTTATCGGCGTGGGCGAAACCATTGACG
ATTTGCGCCCGTTTAACGCGCGCGAATACATCAACGCCTTGTTTGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(105-171)

SRP54-type protein, GTPase domain (SRP54)

(190-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.993

100

0.632