NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	NT239_RS04535	Genome accession	NZ_CP102611
Coordinates	975626..976981 (-)	Length	451 a.a.
NCBI ID	WP_373976048.1	Uniprot ID	-
Organism	Chitinibacter sp. SCUT-21
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 970626..981981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NT239_RS04510 (NT239_04520)	-	970859..970973 (+)	115	Protein_891	type IV pilin protein	-
NT239_RS04515 (NT239_04525)	-	971682..973313 (-)	1632	WP_373976044.1	ArnT family glycosyltransferase	-
NT239_RS04520 (NT239_04530)	rpmE	973465..973674 (-)	210	WP_373976045.1	50S ribosomal protein L31	-
NT239_RS04525 (NT239_04535)	rho	973759..975015 (-)	1257	WP_373976046.1	transcription termination factor Rho	-
NT239_RS04530 (NT239_04540)	trxA	975152..975478 (-)	327	WP_373976047.1	thioredoxin TrxA	-
NT239_RS04535 (NT239_04545)	radA	975626..976981 (-)	1356	WP_373976048.1	DNA repair protein RadA	Machinery gene
NT239_RS04540 (NT239_04550)	flgL	977042..978508 (-)	1467	WP_373976049.1	flagellar hook-associated protein FlgL	-
NT239_RS04545 (NT239_04555)	flgK	978528..980711 (-)	2184	WP_373976050.1	flagellar hook-associated protein FlgK	-
NT239_RS04550 (NT239_04560)	flgJ	980756..981697 (-)	942	WP_373976051.1	flagellar assembly peptidoglycan hydrolase FlgJ	-

Sequence

Protein

Download Length: 451 a.a. Molecular weight: 48239.95 Da Isoelectric Point: 7.7383

                                >NTDB_id=718141 NT239_RS04535 WP_373976048.1 975626..976981(-) (radA) [Chitinibacter sp. SCUT-21]

MSKVKNQFVCRLCGGLSPKWQGQCPQCGEWNSLEEQVVQPAVTTGRFQSLAADGAIKNLSDVEAEELPRTPTHLAELDRV

LGGGLVPGGVVLIGGDPGIGKSTLLLQALARLAESLPVLYVSGEESAQQIALRARRLGVPAAKVRLYPEISLEKILLALE

REAPKVVVIDSIQTIYTEALTSAPGSVAQVRECSAQLTRFAKRHGTSILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDT

HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVANPSALFLSQHDQPVPGSCVMVTQEGSRPMLVEVQALVDDAHAAQVK

RLAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVKIIEPAADLAMLIAIVSSLKNKPLPNKMVVFGEVGLAGEVR

PVQRGQERLREASKLGFTHAIVPKANKPKQAIDGMTVVAVDRLEQAVDAAF

Nucleotide

Download Length: 1356 bp

                                >NTDB_id=718141 NT239_RS04535 WP_373976048.1 975626..976981(-) (radA) [Chitinibacter sp. SCUT-21]

ATGAGTAAAGTAAAGAATCAATTTGTCTGCCGCCTGTGTGGGGGGCTTTCTCCCAAATGGCAGGGGCAATGCCCGCAATG

TGGCGAATGGAATAGCTTAGAAGAACAAGTGGTGCAGCCTGCGGTGACAACTGGGCGCTTCCAAAGCTTGGCCGCCGATG

GCGCAATCAAAAATTTATCCGACGTTGAAGCCGAAGAGTTGCCGCGTACACCGACGCATTTGGCTGAACTGGACCGCGTA

TTAGGTGGTGGCTTAGTGCCAGGCGGTGTGGTGTTAATCGGTGGAGATCCTGGGATTGGTAAATCAACTTTGCTACTGCA

AGCCTTGGCGCGCTTGGCGGAGTCTTTGCCGGTGCTGTACGTCAGCGGTGAAGAATCGGCACAGCAAATTGCACTGCGCG

CGCGCCGCCTTGGTGTGCCTGCGGCCAAAGTGCGTTTGTATCCTGAAATTAGTCTAGAAAAGATCCTACTAGCGCTCGAG

CGTGAAGCGCCAAAAGTTGTGGTGATTGACTCGATTCAAACCATTTATACCGAGGCCTTAACCAGTGCACCCGGTAGCGT

TGCACAAGTTCGCGAGTGTTCGGCGCAATTAACGCGCTTTGCCAAACGCCACGGCACGTCGATTTTGCTGGTTGGCCATG

TGACCAAAGAAGGCGCTTTAGCAGGGCCGCGCGTGCTTGAGCATATTGTTGATGCGGTGCTGTATTTTGAAGGCGATACG

CATTCGAGTTTTCGCCTGATTCGCGCGATCAAAAACCGCTTTGGTGCGGTGAATGAACTCGGTGTTTTCGCGATGACCGA

CAAAGGTTTGCGTGAAGTCGCTAACCCGTCGGCACTGTTTTTAAGCCAGCACGATCAGCCCGTGCCTGGCTCTTGTGTAA

TGGTGACACAAGAGGGCTCGCGCCCGATGTTAGTTGAAGTGCAGGCGCTGGTGGACGATGCACATGCCGCGCAAGTAAAG

CGCCTGGCGGTTGGGGTGGAGCAAAATCGTTTGGCGCTGTTATTGGCGGTATTGCATCGCCATGCTGGTATTGCTGCGTT

TGATCAGGATGTATTTATCAATGCAGTGGGCGGCGTTAAGATTATCGAGCCCGCCGCCGATTTGGCGATGTTGATCGCAA

TTGTGTCGTCGCTTAAAAATAAACCGCTGCCCAATAAAATGGTGGTGTTTGGTGAAGTTGGTTTGGCTGGGGAGGTGCGC

CCAGTTCAGCGCGGACAAGAGCGTTTGCGTGAGGCGTCCAAGCTTGGCTTTACGCATGCGATAGTTCCAAAAGCCAATAA

ACCTAAGCAGGCGATAGATGGAATGACCGTGGTCGCGGTTGATCGACTCGAGCAGGCCGTAGATGCTGCTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-218)

Subunit ChlI of Mg-chelatase (ChlI)

(364-426)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.156	100	0.492
radA	Streptococcus mitis NCTC 12261	47.484	100	0.481
radA	Streptococcus mitis SK321	47.484	100	0.481
radA	Streptococcus pneumoniae Rx1	47.484	100	0.481
radA	Streptococcus pneumoniae D39	47.484	100	0.481
radA	Streptococcus pneumoniae R6	47.484	100	0.481
radA	Streptococcus pneumoniae TIGR4	47.484	100	0.481

Detailed information NTG0718141