Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NT239_RS04215 Genome accession   NZ_CP102611
Coordinates   909139..910539 (-) Length   466 a.a.
NCBI ID   WP_373975983.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 904139..915539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS04180 (NT239_04190) - 904748..905353 (-) 606 WP_373975976.1 flavin prenyltransferase UbiX -
  NT239_RS04185 (NT239_04195) - 905369..905962 (-) 594 WP_373975977.1 Gx transporter family protein -
  NT239_RS04190 (NT239_04200) - 905943..906326 (-) 384 WP_373975978.1 NusG domain II-containing protein -
  NT239_RS04195 (NT239_04205) rapZ 906316..907176 (-) 861 WP_373975979.1 RNase adapter RapZ -
  NT239_RS04200 (NT239_04210) hprK 907176..908120 (-) 945 WP_373975980.1 HPr(Ser) kinase/phosphatase -
  NT239_RS04205 (NT239_04215) - 908203..908676 (-) 474 WP_373975981.1 PTS sugar transporter subunit IIA -
  NT239_RS04210 (NT239_04220) hpf 908782..909108 (-) 327 WP_373975982.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NT239_RS04215 (NT239_04225) rpoN/rpoN1 909139..910539 (-) 1401 WP_373975983.1 RNA polymerase factor sigma-54 Machinery gene
  NT239_RS04220 (NT239_04230) lptB 910559..911281 (-) 723 WP_373975984.1 LPS export ABC transporter ATP-binding protein -
  NT239_RS04225 (NT239_04235) lptA 911287..911802 (-) 516 WP_373975985.1 lipopolysaccharide transport periplasmic protein LptA -
  NT239_RS04230 (NT239_04240) lptC 911756..912322 (-) 567 WP_373975986.1 LPS export ABC transporter periplasmic protein LptC -
  NT239_RS04235 (NT239_04245) - 912365..912877 (-) 513 WP_373975987.1 KdsC family phosphatase -
  NT239_RS04240 (NT239_04250) - 912951..913928 (-) 978 WP_373975988.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52361.34 Da        Isoelectric Point: 4.6111

>NTDB_id=718139 NT239_RS04215 WP_373975983.1 909139..910539(-) (rpoN/rpoN1) [Chitinibacter sp. SCUT-21]
MKQTLQLRMSQQLNLTPQLQQSIKLLQLSTLDFNQEIDQFLADNPLLEREDSGQEGLEAVEQPTSDSADASVESNDDLDG
LRWDEVKSGSSFDDDDERDPTLRVAIEATLRDHLLDQARLMGLSRRDHAMLSLLIEALDEDGLLTQELDEIFAQLPDDLV
CELELEPEELRIAHQYLTQLDPIGVGARSLSECLLLQLKNYPASADLDLARRLIDSGLELLAIRDFAKLKKQFGCDDDQL
RRAQQIIRGLNPRPAANWGTDTTRYVVPDVIVQKLRGRWTVRLNQAAQPKIKVNEMYARLLQGESGESMTGALQEARWLI
KSIEQRGSTILRVAQAIVARQQAFFEYGEVAMKPMVLRDIAEELDLHESTISRVTTQKFMLTPRGVLEYKYFFGSHVEND
SGGENSATSIKALIKQLVAQENPKKPLSDSAITEELAKQGVAVARRTVAKYREALNIAPASQRKSL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=718139 NT239_RS04215 WP_373975983.1 909139..910539(-) (rpoN/rpoN1) [Chitinibacter sp. SCUT-21]
ATGAAGCAAACATTGCAGCTGCGCATGTCGCAGCAGCTCAATTTAACACCGCAATTACAGCAGTCGATTAAGCTGCTGCA
ACTTTCCACGCTTGATTTTAACCAAGAGATCGACCAGTTTTTAGCTGATAACCCGTTACTAGAGCGTGAAGATTCCGGTC
AAGAAGGTTTGGAGGCTGTAGAGCAGCCCACCTCGGATTCCGCAGACGCAAGCGTCGAATCAAACGATGATTTGGACGGT
TTGCGCTGGGACGAGGTGAAAAGCGGCTCATCGTTTGACGATGATGATGAGCGAGATCCAACCTTGCGTGTGGCGATTGA
AGCAACCTTGCGTGATCACCTGCTCGATCAAGCGCGTTTGATGGGGCTATCGCGCCGCGATCACGCCATGCTTTCATTGT
TGATCGAAGCATTGGACGAGGATGGCCTGCTTACGCAAGAACTCGACGAAATTTTTGCGCAACTACCGGACGATCTGGTC
TGCGAGCTTGAACTTGAACCTGAAGAGCTGCGCATTGCGCATCAATATTTAACGCAGCTCGACCCGATTGGTGTTGGGGC
GCGCTCGCTGTCCGAGTGCCTGCTGCTGCAACTCAAAAATTATCCTGCAAGTGCCGATTTAGATCTGGCTCGACGTTTAA
TTGACTCTGGGCTCGAGCTATTGGCCATCCGAGATTTTGCCAAGCTGAAAAAACAATTTGGCTGCGATGACGATCAGCTA
CGTCGTGCGCAACAAATCATCCGCGGCTTAAATCCGAGACCCGCAGCGAACTGGGGCACAGATACAACACGTTATGTTGT
GCCGGATGTCATTGTGCAAAAGTTACGTGGGCGCTGGACTGTGCGCTTAAATCAAGCCGCGCAGCCCAAAATCAAAGTCA
ATGAAATGTATGCACGCTTGCTTCAAGGCGAGTCTGGCGAATCAATGACAGGTGCGCTGCAAGAAGCTAGGTGGTTGATT
AAAAGCATAGAACAGCGCGGCAGTACTATTTTGCGCGTTGCTCAAGCCATTGTGGCGAGGCAGCAGGCATTCTTTGAATA
CGGCGAAGTCGCGATGAAACCCATGGTGTTGCGTGATATTGCCGAAGAGCTAGATTTACACGAATCGACAATTTCACGTG
TAACAACGCAAAAATTTATGCTGACACCACGTGGGGTTTTGGAGTACAAATACTTCTTCGGTAGCCATGTTGAAAACGAC
AGTGGCGGCGAGAATTCAGCAACATCGATTAAAGCTTTGATCAAACAACTGGTAGCCCAAGAAAATCCGAAGAAACCATT
GTCGGATAGTGCTATAACTGAAGAACTCGCAAAGCAAGGTGTCGCAGTAGCGCGGCGCACCGTTGCTAAATATCGGGAGG
CGCTCAATATCGCGCCTGCCAGTCAGCGCAAAAGCCTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(310-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-297)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.713

100

0.528