Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSH70_RS20625 Genome accession   NZ_CP117438
Coordinates   4575975..4576577 (-) Length   200 a.a.
NCBI ID   WP_053257437.1    Uniprot ID   A0ABY1T5N4
Organism   Pseudomonas fluorescens strain FP2327     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4570975..4581577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS20600 (PSH70_20595) hemN 4571144..4572526 (+) 1383 WP_053257433.1 oxygen-independent coproporphyrinogen III oxidase -
  PSH70_RS20605 (PSH70_20600) - 4572533..4573018 (-) 486 WP_053257434.1 hypothetical protein -
  PSH70_RS20610 (PSH70_20605) fnr 4573171..4573905 (+) 735 WP_003219044.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  PSH70_RS20615 (PSH70_20610) - 4573987..4574535 (+) 549 WP_053257435.1 adenine phosphoribosyltransferase -
  PSH70_RS20620 (PSH70_20615) - 4574638..4575786 (-) 1149 WP_069551474.1 acyl-CoA dehydrogenase family protein -
  PSH70_RS20625 (PSH70_20620) recR 4575975..4576577 (-) 603 WP_053257437.1 recombination mediator RecR Machinery gene
  PSH70_RS20630 (PSH70_20625) - 4576644..4577678 (-) 1035 WP_053257438.1 NADP-dependent oxidoreductase -
  PSH70_RS20635 (PSH70_20630) - 4577859..4578197 (-) 339 WP_010563853.1 YbaB/EbfC family nucleoid-associated protein -
  PSH70_RS20640 (PSH70_20635) dnaX 4578244..4580319 (-) 2076 WP_078827125.1 DNA polymerase III subunit gamma/tau -
  PSH70_RS20645 (PSH70_20640) - 4580453..4581220 (+) 768 WP_305438538.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21512.73 Da        Isoelectric Point: 6.6286

>NTDB_id=718131 PSH70_RS20625 WP_053257437.1 4575975..4576577(-) (recR) [Pseudomonas fluorescens strain FP2327]
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMTGVGHCRQCRTLTEEELCPQCADPRRDDT
LLCVVEGPMDVYAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPQLVARIQEQGTFTEVILATNPTVEGEATAHYIAQLL
SNKGLVTSRIAHGVPLGGELELVDGGTLAHSFAGRKPIAL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=718131 PSH70_RS20625 WP_053257437.1 4575975..4576577(-) (recR) [Pseudomonas fluorescens strain FP2327]
ATGAGCTTCAGCCCTCTGATTCGCCAACTGATCGACGCCCTGCGTACCTTGCCGGGTGTGGGTCAGAAAACCGCCCAGCG
TATGGCGCTGCAACTGCTGGAGCGGGATCGCAGCGGCGGCACGCGCTTGGCCCAGGCCTTGAGCCAGGCCATGACCGGCG
TGGGCCACTGCCGCCAGTGCCGCACCCTCACCGAAGAAGAACTCTGCCCGCAATGTGCCGACCCGCGCCGCGACGACACG
TTGCTGTGCGTGGTAGAGGGGCCGATGGATGTGTATGCGGTAGAGCAGACCGGCTATCGCGGGCGCTACTTTGTGCTTAA
AGGGCACCTCTCGCCGTTGGACGGCCTGGGGCCGGAAGCCATCGGCATTCCGCAACTGGTGGCACGCATTCAAGAGCAGG
GCACCTTTACCGAGGTGATCCTGGCGACCAACCCAACGGTGGAAGGTGAGGCGACCGCGCATTACATCGCCCAGCTGTTG
AGCAACAAAGGGCTGGTGACGTCGCGTATCGCCCACGGCGTGCCGCTGGGGGGTGAGCTGGAATTGGTCGATGGCGGCAC
GTTGGCGCATTCGTTTGCAGGTCGCAAACCGATCGCCCTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(82-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47

100

0.47
  recR Bacillus subtilis subsp. subtilis str. 168

46.193

98.5

0.455