Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KQ693_RS05425 Genome accession   NZ_CP102606
Coordinates   960250..961164 (-) Length   304 a.a.
NCBI ID   WP_267262161.1    Uniprot ID   -
Organism   Thermus sp. PS18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 955250..966164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ693_RS05400 (KQ693_05400) - 955838..956734 (-) 897 WP_267262158.1 phosphoglucomutase -
  KQ693_RS05405 (KQ693_05405) - 956802..958928 (+) 2127 WP_267262356.1 ATP-dependent helicase -
  KQ693_RS05410 (KQ693_05410) - 958933..959658 (+) 726 WP_267262159.1 hypothetical protein -
  KQ693_RS05415 (KQ693_05415) - 959646..960065 (-) 420 WP_267262160.1 disulfide bond formation protein B -
  KQ693_RS05420 (KQ693_05420) - 960095..960253 (+) 159 WP_197049813.1 DUF5522 domain-containing protein -
  KQ693_RS05425 (KQ693_05425) pilA 960250..961164 (-) 915 WP_267262161.1 signal recognition particle-docking protein FtsY Machinery gene
  KQ693_RS05430 (KQ693_05430) - 961207..961647 (-) 441 WP_267262162.1 hypothetical protein -
  KQ693_RS05435 (KQ693_05435) gltX 961679..963097 (-) 1419 WP_267262163.1 glutamate--tRNA ligase -
  KQ693_RS05440 (KQ693_05440) lptB 963152..963880 (+) 729 WP_219760073.1 LPS export ABC transporter ATP-binding protein -
  KQ693_RS05445 (KQ693_05445) - 963884..965269 (+) 1386 WP_267262164.1 DUF3084 domain-containing protein -
  KQ693_RS05450 (KQ693_05450) prmC 965177..966034 (-) 858 WP_267262165.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 32926.15 Da        Isoelectric Point: 7.3622

>NTDB_id=718114 KQ693_RS05425 WP_267262161.1 960250..961164(-) (pilA) [Thermus sp. PS18]
MGFFDRLKAGLAKTRETLLKAIPWGGSPEEVLEELEMALLAADVGLEATEELLAEVRASGRKDLKEAVKEKLVQMLEPDE
RRATLRKLGFRPQNPKPVEPQGHVVLVVGVNGVGKTTTIAKLGRYYRNLGKKVMFCAGDTFRAAGGAQLSEWGKRLDIPV
IQGPEGADPAALAFDAASARKARGYDLLLVDTAGRLHTKHNLMEELKKVKRAITKADPEEPKEVWLVLDAVTGQNGLEQA
KRFHEAVGLTGVVVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDLQPFDAEAFVEALLEG

Nucleotide


Download         Length: 915 bp        

>NTDB_id=718114 KQ693_RS05425 WP_267262161.1 960250..961164(-) (pilA) [Thermus sp. PS18]
ATGGGCTTCTTTGACCGATTGAAAGCCGGCCTCGCCAAGACGCGGGAAACCCTCCTCAAGGCCATCCCCTGGGGCGGAAG
CCCCGAGGAGGTCCTGGAGGAGCTGGAGATGGCCCTCCTTGCCGCCGACGTGGGCCTCGAGGCCACCGAGGAGCTCCTGG
CCGAGGTAAGGGCCTCGGGGCGGAAGGACCTGAAGGAGGCCGTTAAGGAGAAACTTGTCCAGATGCTGGAGCCGGACGAG
CGCCGGGCCACCTTGAGGAAGCTCGGCTTCCGCCCGCAAAACCCTAAGCCCGTGGAACCCCAGGGCCACGTGGTCCTGGT
GGTGGGGGTGAACGGGGTGGGCAAGACCACCACCATCGCCAAGCTGGGCCGCTATTACCGGAACCTGGGCAAGAAGGTGA
TGTTTTGCGCCGGGGACACCTTCCGCGCCGCCGGGGGAGCCCAGCTTTCCGAGTGGGGGAAACGCCTGGACATCCCCGTG
ATCCAGGGGCCGGAAGGAGCCGACCCCGCCGCTTTGGCCTTTGATGCGGCAAGCGCCCGGAAAGCCAGGGGCTACGACCT
CCTCCTGGTAGACACCGCAGGCCGCCTCCACACCAAGCACAACCTGATGGAGGAGCTGAAGAAGGTGAAGCGGGCCATCA
CCAAGGCCGATCCCGAGGAGCCCAAGGAGGTCTGGCTGGTGCTAGATGCCGTCACCGGGCAAAACGGCCTGGAGCAGGCC
AAGCGCTTCCACGAGGCGGTGGGGCTTACAGGGGTCGTCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGGGTCCTCAT
CCCCATCGTGCGCACCCTGAAGGTGCCCATCCGGTTCATCGGGGTAGGGGAAGGCCCCGACGACCTCCAGCCCTTCGACG
CCGAGGCCTTTGTGGAGGCGTTGCTGGAGGGTTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(29-70)

SRP54-type protein, GTPase domain (SRP54)

(104-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.363

100

0.51