Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PSH70_RS07770 Genome accession   NZ_CP117438
Coordinates   1731069..1731677 (-) Length   202 a.a.
NCBI ID   WP_017137423.1    Uniprot ID   A0A1H3ISD2
Organism   Pseudomonas fluorescens strain FP2327     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726069..1736677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS07745 (PSH70_07740) - 1726402..1726638 (+) 237 WP_021490990.1 DUF1653 domain-containing protein -
  PSH70_RS07750 (PSH70_07745) topA 1726753..1729374 (+) 2622 WP_053255039.1 type I DNA topoisomerase -
  PSH70_RS07755 (PSH70_07750) - 1729501..1730022 (+) 522 WP_053255040.1 DUF6586 family protein -
  PSH70_RS07760 (PSH70_07755) - 1730272..1730505 (+) 234 WP_053255041.1 hypothetical protein -
  PSH70_RS07765 (PSH70_07760) sulA 1730585..1731058 (-) 474 WP_053255042.1 SOS-induced cell division inhibitor SulA -
  PSH70_RS07770 (PSH70_07765) dinR/lexA 1731069..1731677 (-) 609 WP_017137423.1 transcriptional repressor LexA Regulator
  PSH70_RS07775 (PSH70_07770) - 1731941..1732648 (+) 708 WP_053255043.1 TetR/AcrR family transcriptional regulator -
  PSH70_RS07780 (PSH70_07775) nagZ 1732802..1733812 (+) 1011 WP_169875785.1 beta-N-acetylhexosaminidase -
  PSH70_RS07785 (PSH70_07780) - 1733925..1736615 (-) 2691 WP_305793288.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22245.71 Da        Isoelectric Point: 7.3867

>NTDB_id=718098 PSH70_RS07770 WP_017137423.1 1731069..1731677(-) (dinR/lexA) [Pseudomonas fluorescens strain FP2327]
MLKLTPRQAEILAFIKRCLDDNGYPPTRAEIALELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKADESTL
PIIGRVAAGAPILAQQHVEESCNINPTFFHPRADYLLRVHGMSMKDVGIFDGDLLAVHTTREARNGQIVVARIGDEVTVK
RFKREGSKVWLMAENPEFAPIEVNLKDQDLVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=718098 PSH70_RS07770 WP_017137423.1 1731069..1731677(-) (dinR/lexA) [Pseudomonas fluorescens strain FP2327]
ATGCTAAAACTGACGCCACGCCAAGCTGAGATTCTGGCTTTTATCAAGCGCTGCCTCGATGACAACGGCTACCCGCCGAC
ACGAGCGGAAATTGCGCTGGAACTGGGGTTCAAATCCCCCAACGCTGCCGAAGAACACCTCAAGGCCCTCGCTCGCAAAG
GCGCGATCGAGATGACCCCAGGGGCTTCCCGCGGCATTCGCATCCCTGGCTTCGAAGCCAAGGCCGACGAGTCGACGCTG
CCGATTATCGGTCGCGTCGCCGCCGGTGCGCCGATCCTGGCGCAACAGCACGTCGAGGAATCCTGCAACATCAACCCGAC
CTTTTTCCATCCGCGTGCCGACTACCTGTTGCGCGTGCACGGCATGAGCATGAAGGACGTGGGGATTTTCGACGGCGACC
TGCTGGCCGTCCACACCACCCGCGAAGCCCGTAATGGCCAGATCGTCGTCGCGCGTATCGGCGATGAAGTCACCGTCAAA
CGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGATGGCCGAGAACCCTGAGTTCGCCCCGATTGAAGTGAACCTGAAAGA
TCAGGACCTGGTGATCGAAGGCTTGAGCGTCGGCGTCATTCGCCGCTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(81-194)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3ISD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.391