Detailed information NTG0718096

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PSH70_RS06485
• Genome accession: NZ_CP117438
• Coordinates: 1473844..1474851 (+)
• Length: 335 a.a.
• NCBI ID: WP_053254759.1
• Uniprot ID: A0ABY1TE31
• Organism: Pseudomonas fluorescens strain FP2327
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1468844..1479851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH70_RS06455 (PSH70_06455)	fghA	1468849..1469694 (+)	846	WP_053254754.1	S-formylglutathione hydrolase	-
PSH70_RS06460 (PSH70_06460)	ispF	1469749..1470222 (+)	474	WP_053254755.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PSH70_RS06465 (PSH70_06465)	truD	1470219..1471277 (+)	1059	WP_069552038.1	tRNA pseudouridine(13) synthase TruD	-
PSH70_RS06470 (PSH70_06470)	surE	1471265..1472014 (+)	750	WP_069552039.1	5'/3'-nucleotidase SurE	-
PSH70_RS06475 (PSH70_06475)	-	1472056..1472691 (+)	636	WP_169850588.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PSH70_RS06480 (PSH70_06480)	-	1472901..1473737 (+)	837	WP_069552040.1	peptidoglycan DD-metalloendopeptidase family protein	-
PSH70_RS06485 (PSH70_06485)	rpoS	1473844..1474851 (+)	1008	WP_053254759.1	RNA polymerase sigma factor RpoS	Regulator
PSH70_RS06490 (PSH70_06490)	-	1475086..1475295 (-)	210	WP_002554837.1	cold-shock protein	-
PSH70_RS06495 (PSH70_06495)	dcd	1475685..1476251 (+)	567	WP_017137166.1	dCTP deaminase	-
PSH70_RS06500 (PSH70_06500)	-	1476359..1476559 (+)	201	WP_027604457.1	hypothetical protein	-
PSH70_RS06505 (PSH70_06505)	pdeM	1476589..1477224 (-)	636	WP_053255348.1	ligase-associated DNA damage response endonuclease PdeM	-
PSH70_RS06510 (PSH70_06510)	-	1477239..1479719 (-)	2481	WP_305793531.1	ligase-associated DNA damage response DEXH box helicase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38295.39 Da
• Isoelectric Point: 4.8988

>NTDB_id=718096 PSH70_RS06485 WP_053254759.1 1473844..1474851(+) (rpoS) [Pseudomonas fluorescens strain FP2327]
MALSKEAPEFDIDDEDLAIEILTDKESMSNDEGSATPSVRTKSKNSTALKQHKYIDYTRALDATQLYLNEIGFSPLLTPE
EEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=718096 PSH70_RS06485 WP_053254759.1 1473844..1474851(+) (rpoS) [Pseudomonas fluorescens strain FP2327]
ATGGCTCTCAGTAAAGAAGCGCCGGAGTTTGACATCGACGATGAGGATCTCGCTATTGAGATACTCACCGATAAGGAATC
GATGTCGAATGATGAAGGGTCTGCTACACCTTCAGTTCGCACCAAATCCAAGAACTCCACCGCGTTAAAGCAACACAAGT
ACATTGACTACACGCGGGCGCTCGACGCAACGCAGCTGTACCTCAATGAGATCGGCTTTTCCCCTCTGCTGACTCCCGAA
GAAGAAGTCCATTTTGCGCGCTTGTCGCAAAAGGGCGATCCGGCCGGGCGTAAGCGCATGATTGAAAGTAACCTGCGGCT
GGTGGTTAAAATCGCCCGGCGTTATGTCAATCGTGGTCTGTCCCTGTTGGACCTGATCGAAGAGGGCAACCTGGGCTTGA
TCCGGGCGGTGGAGAAGTTCGACCCTGAGCGGGGCTTCCGCTTTTCAACCTATGCCACCTGGTGGATTCGCCAGACCATC
GAACGGGCGATCATGAATCAGACCCGCACGATCCGGTTGCCGATCCATGTGGTCAAAGAGCTCAACGTCTACCTGCGGGC
AGCGCGAGAGCTCACACAAAAACTCGATCATGAACCTTCGCCTGAAGAGATCGCCAACCTGCTGGAAAAACCGGTAGGGG
AGGTCAAGCGCATGCTTGGCTTGAATGAGCGCGTGTCTTCGGTCGATGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACCCTGACGGATGATCGCCCGACGGATCCTTGCGAGCTGTTGCAGGACGATGATCTTTCCCAAAGCATTGACCA
GTGGCTGTCTGAGCTCACGGATAAGCAGCGTGAAGTGGTGATTCGCCGCTTCGGCCTGCGTGGCCATGAGAGCAGCACCC
TGGAGGATGTAGGCCTGGAAATTGGCCTGACCCGTGAGCGGGTGCGGCAGATCCAGGTAGAGGGCCTCAAGCGCTTGCGT
GAGATCCTCGAGAAGAATGGCTTGTCGAGTGAGTCGTTGTTCCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-95)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	97.91	0.651