Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NR302_RS18705 Genome accession   NZ_CP102604
Coordinates   4021884..4023404 (+) Length   506 a.a.
NCBI ID   WP_258144160.1    Uniprot ID   -
Organism   Pantoea sp. SOD02     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4016884..4028404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR302_RS18685 (NR302_18685) - 4018459..4019388 (-) 930 WP_007888821.1 branched-chain amino acid transaminase -
  NR302_RS18690 (NR302_18690) ilvM 4019407..4019664 (-) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  NR302_RS18695 (NR302_18695) ilvG 4019661..4021307 (-) 1647 WP_258144159.1 acetolactate synthase 2 catalytic subunit -
  NR302_RS18700 (NR302_18700) ilvL 4021457..4021555 (-) 99 WP_071531048.1 ilv operon leader peptide -
  NR302_RS18705 (NR302_18705) comM 4021884..4023404 (+) 1521 WP_258144160.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NR302_RS18710 (NR302_18710) - 4023435..4023773 (-) 339 WP_008106616.1 DUF413 domain-containing protein -
  NR302_RS18715 (NR302_18715) hdfR 4023895..4024716 (+) 822 WP_008106614.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55170.38 Da        Isoelectric Point: 7.6528

>NTDB_id=718096 NR302_RS18705 WP_258144160.1 4021884..4023404(+) (comM) [Pantoea sp. SOD02]
MSLSKVLTRAALGVQAPLVTVEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPDAKLGQYEFLGELALNGALCGVQAAIPAAMAALHAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNKTTLTVAHYHPETLEQEKQDLSDIIGQDQGRRALEITAAGGHNLLLIGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGNLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GEIAISRTRAKVTYPARFQLIGAMNPSPTGHYQGNHNRSSPQQVLRYLNRLSGPFLDRFDLSLEVPLLPSGSLSKKQQVS
ESSAEVLTRVLAARQIQTTRSGKVNAHLSNPEILRWCPLKQQDAEWLEEVLNSLGLSVRAWQRILKVARTIADLAGEELI
TRSHLQEAVGYRSIDRLMIYLHKTLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=718096 NR302_RS18705 WP_258144160.1 4021884..4023404(+) (comM) [Pantoea sp. SOD02]
ATGTCTTTATCCAAAGTATTAACACGAGCTGCGCTAGGTGTTCAGGCTCCGCTGGTGACGGTGGAAGTACACATCAGCAA
CGGCTTGCCGGCCCTGACGCTGGTTGGACTGCCTGAAACCACCGTAAAAGAAGCGCGGGAACGGGTGCGTAGCGCAATTA
TTAATAGCGGATTCACCTTCCCGGCGAAACGCGTCACCATCAATCTGGCACCTGCTGATCTGCCTAAAGAAGGCGGACGC
TATGATCTTCCCATCGCTATCGCCATTCTGGCAGCCTCTGAGCAGCTGCCAGACGCAAAACTAGGGCAATATGAATTCCT
GGGGGAGTTAGCGCTTAACGGCGCGCTCTGTGGCGTTCAGGCCGCTATTCCGGCGGCGATGGCGGCGCTGCATGCGGGCA
GACAAATGGTGTTAGCTGAACAGAATCAACAGGATGTCGGGTTGATTCAACAAGGCGAGACGCTGGTTGGCAAACATCTG
GTAGAAATCTGTGCGTTTCTACATAACAAAACTACCCTCACCGTTGCGCATTATCACCCTGAAACGCTTGAACAGGAAAA
GCAGGACCTCAGCGATATCATTGGTCAGGATCAGGGCCGGCGTGCACTGGAGATAACCGCAGCTGGCGGGCATAACCTGT
TACTGATTGGACCGCCGGGCACGGGCAAGACCATGTTGGCGACGCGTCTGCCCGGTATCATGCCGCCGTTAGACGACCAG
GAAGCGCTGGAGTGCGCCGCTATTGCCAGTCTGGTAAGCAGCGGCAATCTCCATCATCAGTGGCGCAAACGGCCGTTCAG
AGCGCCTCATCACAGTGCATCACTCTATGCGCTGGTTGGTGGTGGTTCATTGCCACGACCGGGGGAAATATCTTTGGCAC
ACAACGGTGTGTTATTTCTCGATGAGCTGCCAGAGTTTGAGCGCAGAACGCTGGATGCATTGCGCGAGCCGATCGAATCC
GGGGAAATCGCCATTTCACGCACACGCGCTAAAGTGACTTATCCCGCGCGCTTTCAATTGATCGGTGCAATGAATCCTAG
CCCGACCGGGCATTATCAGGGCAATCATAATCGCTCATCACCTCAGCAAGTGTTGCGCTATCTCAATCGCCTATCAGGAC
CTTTTCTCGATCGCTTTGATTTATCTTTAGAAGTTCCACTTCTTCCGAGCGGATCGCTGAGTAAGAAACAACAAGTCAGC
GAAAGCAGCGCTGAAGTTTTAACTCGCGTCCTTGCCGCGCGACAGATTCAAACAACCCGCAGCGGAAAAGTGAATGCTCA
TCTCTCAAACCCGGAGATTTTACGTTGGTGTCCATTGAAGCAGCAGGATGCTGAATGGCTGGAAGAGGTGTTGAATTCGT
TGGGGCTTTCGGTACGCGCCTGGCAGCGGATTTTAAAGGTGGCGAGGACAATCGCTGATTTAGCAGGTGAAGAGCTGATT
ACGCGGAGTCATTTGCAGGAAGCAGTGGGATATCGCAGCATCGACCGCTTAATGATCTATCTGCACAAAACTCTGGAATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.079

100

0.601
  comM Glaesserella parasuis strain SC1401

60.04

99.407

0.597
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

46.68

98.221

0.458
  comM Legionella pneumophila strain ERS1305867

46.68

98.221

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441