Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IL310_RS14985 Genome accession   NZ_CP117409
Coordinates   2540141..2540896 (-) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2535141..2545896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS14965 (IL310_14975) - 2535601..2536581 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  IL310_RS14970 (IL310_14980) - 2536574..2538172 (+) 1599 WP_201248677.1 2-oxo acid dehydrogenase subunit E2 -
  IL310_RS14975 (IL310_14985) lpdA 2538365..2539783 (+) 1419 WP_017863949.1 dihydrolipoyl dehydrogenase -
  IL310_RS14980 (IL310_14990) - 2539854..2540027 (-) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  IL310_RS14985 (IL310_14995) recO 2540141..2540896 (-) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  IL310_RS14990 (IL310_15000) - 2540995..2542170 (-) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  IL310_RS15000 (IL310_15010) - 2542501..2543022 (-) 522 WP_033900573.1 N-acetyltransferase -
  IL310_RS15005 (IL310_15015) - 2543232..2544854 (+) 1623 WP_058222955.1 SulP family inorganic anion transporter -
  IL310_RS15010 (IL310_15020) - 2544935..2545177 (-) 243 WP_012896919.1 TM2 domain-containing protein -
  IL310_RS15015 (IL310_15025) - 2545254..2545703 (-) 450 WP_098383421.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=718071 IL310_RS14985 WP_003132217.1 2540141..2540896(-) (recO) [Lactococcus lactis strain LB7]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=718071 IL310_RS14985 WP_003132217.1 2540141..2540896(-) (recO) [Lactococcus lactis strain LB7]
ATGCGTGATGCCGAAACTCAAGGTCTAGTACTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAATA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534