Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   IL310_RS14825 Genome accession   NZ_CP117409
Coordinates   2508725..2508943 (-) Length   72 a.a.
NCBI ID   WP_010905100.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503725..2513943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS14780 (IL310_14790) - 2503987..2504241 (-) 255 WP_023189493.1 hypothetical protein -
  IL310_RS14785 (IL310_14795) - 2504243..2504425 (-) 183 WP_201248921.1 hypothetical protein -
  IL310_RS14790 (IL310_14800) - 2504620..2504894 (-) 275 Protein_2485 hypothetical protein -
  IL310_RS14795 (IL310_14805) - 2504956..2505054 (-) 99 WP_242481527.1 lactococcin family bacteriocin -
  IL310_RS14800 (IL310_14810) - 2505328..2505507 (+) 180 WP_201248922.1 lactococcin family bacteriocin -
  IL310_RS14805 (IL310_14815) - 2505528..2505707 (+) 180 WP_023163573.1 hypothetical protein -
  IL310_RS14810 (IL310_14820) - 2506016..2506678 (+) 663 WP_201248923.1 type II CAAX endopeptidase family protein -
  IL310_RS14815 (IL310_14825) - 2507769..2508449 (-) 681 WP_242481528.1 CPBP family intramembrane glutamic endopeptidase -
  IL310_RS14820 (IL310_14830) - 2508494..2508631 (-) 138 WP_021214958.1 lactococcin family bacteriocin -
  IL310_RS14825 (IL310_14835) comB/nlmE 2508725..2508943 (-) 219 WP_010905100.1 hypothetical protein Regulator
  IL310_RS14830 (IL310_14840) - 2509280..2509432 (+) 153 WP_010905099.1 hypothetical protein -
  IL310_RS14835 (IL310_14845) - 2509442..2509723 (+) 282 WP_201248925.1 hypothetical protein -
  IL310_RS14840 (IL310_14850) - 2509826..2510482 (-) 657 WP_021214956.1 type II CAAX endopeptidase family protein -
  IL310_RS14845 (IL310_14855) - 2510521..2510889 (-) 369 WP_223848592.1 transporter -
  IL310_RS14850 (IL310_14860) - 2511182..2511340 (-) 159 WP_201248927.1 lactococcin family bacteriocin -
  IL310_RS14855 (IL310_14865) - 2511434..2512855 (-) 1422 WP_274448748.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8231.78 Da        Isoelectric Point: 10.5176

>NTDB_id=718069 IL310_RS14825 WP_010905100.1 2508725..2508943(-) (comB/nlmE) [Lactococcus lactis strain LB7]
MKLTGIFLLFLIFKSFPTIFKEENAYKVSATTAINAKDLPNIRYGLQGKTVTIIGKKTYFNYFLDKIMGRTS

Nucleotide


Download         Length: 219 bp        

>NTDB_id=718069 IL310_RS14825 WP_010905100.1 2508725..2508943(-) (comB/nlmE) [Lactococcus lactis strain LB7]
ATGAAATTGACGGGTATATTTCTTTTATTTTTAATTTTTAAATCTTTTCCTACTATCTTTAAAGAGGAAAATGCTTATAA
AGTTTCTGCGACAACCGCTATCAATGCAAAAGACCTCCCAAATATAAGGTATGGCTTGCAAGGAAAAACGGTGACCATTA
TTGGAAAGAAAACTTATTTCAATTACTTTTTAGATAAAATTATGGGGAGGACTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

46.429

77.778

0.361