Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NUW85_RS14315 Genome accession   NZ_CP102603
Coordinates   2944818..2945507 (+) Length   229 a.a.
NCBI ID   WP_198317760.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2939818..2950507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS14290 (NUW85_14295) degS 2940102..2941265 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  NUW85_RS14295 (NUW85_14300) degU 2941342..2942031 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NUW85_RS14300 (NUW85_14305) - 2942129..2942977 (+) 849 WP_003151387.1 DegV family protein -
  NUW85_RS14305 (NUW85_14310) comFA 2943085..2944470 (+) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  NUW85_RS14310 (NUW85_14315) - 2944528..2944812 (+) 285 WP_003151389.1 competence protein ComFB -
  NUW85_RS14315 (NUW85_14320) comFC 2944818..2945507 (+) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  NUW85_RS14320 (NUW85_14325) - 2945581..2946000 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  NUW85_RS14325 (NUW85_14330) flgM 2946070..2946336 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NUW85_RS14330 (NUW85_14335) - 2946351..2946833 (+) 483 WP_003151394.1 flagellar protein FlgN -
  NUW85_RS14335 (NUW85_14340) flgK 2946849..2948366 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  NUW85_RS14340 (NUW85_14345) flgL 2948378..2949295 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NUW85_RS14345 (NUW85_14350) - 2949386..2949955 (+) 570 WP_024085861.1 DUF6470 family protein -
  NUW85_RS14350 (NUW85_14355) fliW 2949985..2950416 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25262.97 Da        Isoelectric Point: 8.2933

>NTDB_id=718062 NUW85_RS14315 WP_198317760.1 2944818..2945507(+) (comFC) [Bacillus amyloliquefaciens strain MBLB0692]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEMRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=718062 NUW85_RS14315 WP_198317760.1 2944818..2945507(+) (comFC) [Bacillus amyloliquefaciens strain MBLB0692]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAATGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603