Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IL310_RS12650 Genome accession   NZ_CP117409
Coordinates   2094781..2095497 (+) Length   238 a.a.
NCBI ID   WP_201248539.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089781..2100497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS12635 (IL310_12640) - 2090106..2092415 (-) 2310 WP_201248540.1 glycoside hydrolase family 65 protein -
  IL310_RS12640 (IL310_12645) - 2092483..2094048 (-) 1566 WP_017864142.1 PTS transporter subunit EIIC -
  IL310_RS12645 (IL310_12650) - 2094185..2094670 (-) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  IL310_RS12650 (IL310_12655) treR 2094781..2095497 (+) 717 WP_201248539.1 trehalose operon repressor Regulator
  IL310_RS12655 (IL310_12660) glmM 2095574..2096932 (-) 1359 WP_201248538.1 phosphoglucosamine mutase -
  IL310_RS12660 (IL310_12665) - 2096978..2097937 (-) 960 WP_012897245.1 CdaR family protein -
  IL310_RS12665 (IL310_12670) cdaA 2097927..2098805 (-) 879 WP_003131542.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27887.52 Da        Isoelectric Point: 6.3441

>NTDB_id=718054 IL310_RS12650 WP_201248539.1 2094781..2095497(+) (treR) [Lactococcus lactis strain LB7]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIHFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=718054 IL310_RS12650 WP_201248539.1 2094781..2095497(+) (treR) [Lactococcus lactis strain LB7]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCACTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGTCATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462