Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IL310_RS10605 Genome accession   NZ_CP117409
Coordinates   1695722..1697389 (-) Length   555 a.a.
NCBI ID   WP_017864362.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1690722..1702389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS10580 (IL310_10585) - 1691139..1691519 (-) 381 WP_003131357.1 cell division protein FtsL -
  IL310_RS10585 (IL310_10590) rsmH 1691677..1692630 (-) 954 WP_010905597.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  IL310_RS10590 (IL310_10595) - 1692850..1693788 (-) 939 WP_201248006.1 DUF805 domain-containing protein -
  IL310_RS10595 (IL310_10600) - 1693812..1694333 (-) 522 WP_033899225.1 DUF805 domain-containing protein -
  IL310_RS10600 (IL310_10605) - 1694431..1694997 (-) 567 WP_201248007.1 TMEM175 family protein -
  IL310_RS10605 (IL310_10610) recN 1695722..1697389 (-) 1668 WP_017864362.1 DNA repair protein RecN Machinery gene
  IL310_RS10610 (IL310_10615) - 1697520..1697966 (-) 447 WP_015426160.1 transcription regulator -
  IL310_RS10615 (IL310_10620) - 1697963..1698769 (-) 807 WP_201248008.1 TlyA family RNA methyltransferase -
  IL310_RS10620 (IL310_10625) - 1698847..1699704 (-) 858 WP_201248009.1 polyprenyl synthetase family protein -
  IL310_RS10625 (IL310_10630) - 1699786..1700943 (-) 1158 WP_033899223.1 glycerate kinase -
  IL310_RS10630 (IL310_10635) - 1701092..1701331 (-) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62810.02 Da        Isoelectric Point: 4.6475

>NTDB_id=718046 IL310_RS10605 WP_017864362.1 1695722..1697389(-) (recN) [Lactococcus lactis strain LB7]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLINRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKVAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=718046 IL310_RS10605 WP_017864362.1 1695722..1697389(-) (recN) [Lactococcus lactis strain LB7]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCAGCGGAAATTAATCTTGAAGAAGATGAACAATTAA
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
CCAAGAGCTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCAGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAAGTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAATTTTCAGCAAACGGGAATGAGCATGTTGAATTCTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGCCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCGCAAGTTGTGGCCATTGCCGACAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.182

100

0.445