Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NUW85_RS04500 Genome accession   NZ_CP102603
Coordinates   1055330..1055614 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050330..1060614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS04480 (NUW85_04480) ade 1050436..1052169 (-) 1734 WP_139885255.1 adenine deaminase -
  NUW85_RS04485 (NUW85_04485) ktrC 1052318..1052983 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NUW85_RS04490 (NUW85_04490) - 1053024..1053851 (-) 828 WP_139885254.1 gamma-glutamylcyclotransferase family protein -
  NUW85_RS04495 (NUW85_04495) - 1053853..1055157 (-) 1305 WP_014304932.1 ATP-binding protein -
  NUW85_RS04500 (NUW85_04500) abrB 1055330..1055614 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NUW85_RS04505 (NUW85_04505) mreBH 1055883..1056890 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  NUW85_RS04510 (NUW85_04510) - 1056962..1057096 (+) 135 WP_003154559.1 protein YkpC -
  NUW85_RS04515 (NUW85_04515) - 1057197..1058429 (+) 1233 WP_025851469.1 aminopeptidase -
  NUW85_RS04520 (NUW85_04520) - 1058459..1059367 (-) 909 WP_003154561.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=718020 NUW85_RS04500 WP_003154557.1 1055330..1055614(-) (abrB) [Bacillus amyloliquefaciens strain MBLB0692]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=718020 NUW85_RS04500 WP_003154557.1 1055330..1055614(-) (abrB) [Bacillus amyloliquefaciens strain MBLB0692]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543