Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   IL310_RS05115 Genome accession   NZ_CP117409
Coordinates   563197..564975 (-) Length   592 a.a.
NCBI ID   WP_201248280.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 558197..569975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS05095 (IL310_05100) - 558344..559288 (+) 945 WP_201248282.1 manganese-dependent inorganic pyrophosphatase -
  IL310_RS05100 (IL310_05105) - 559288..560085 (+) 798 WP_201248281.1 DUF1803 domain-containing protein -
  IL310_RS05105 (IL310_05110) pepT 560114..561355 (+) 1242 WP_003130321.1 peptidase T -
  IL310_RS05110 (IL310_05115) yjeM 561635..563161 (+) 1527 WP_023189054.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  IL310_RS05115 (IL310_05120) recQ 563197..564975 (-) 1779 WP_201248280.1 DNA helicase RecQ Machinery gene
  IL310_RS05120 (IL310_05125) adhP 565171..566193 (+) 1023 WP_012898368.1 alcohol dehydrogenase AdhP -
  IL310_RS05125 (IL310_05130) - 566214..566474 (+) 261 WP_012898367.1 hypothetical protein -
  IL310_RS05130 (IL310_05135) - 566553..568004 (-) 1452 WP_201248279.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  IL310_RS05135 (IL310_05140) - 568214..569887 (+) 1674 WP_201248278.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66907.81 Da        Isoelectric Point: 6.1218

>NTDB_id=718012 IL310_RS05115 WP_201248280.1 563197..564975(-) (recQ) [Lactococcus lactis strain LB7]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQGEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNYSQKTVGELIDFLSAESYLNITSGK
FPLLLISAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
PSQFLQISGVGPVKLEKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=718012 IL310_RS05115 WP_201248280.1 563197..564975(-) (recQ) [Lactococcus lactis strain LB7]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAAGCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAGG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TGCAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAGTGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCAAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACTATTCCCAAAAAACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTATTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCTTAAT
TATTGAATCGAAAACAAAAATCTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CCAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCGAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(520-584)

DEAD/DEAH box helicase (DEAD)

(19-179)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

RQC domain (RQC)

(399-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507