Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NQZ71_RS17415 Genome accession   NZ_CP102589
Coordinates   3493627..3494592 (-) Length   321 a.a.
NCBI ID   WP_317011053.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488627..3499592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS17390 (NQZ71_17410) - 3488931..3489557 (-) 627 WP_144452020.1 DUF2268 domain-containing putative Zn-dependent protease -
  NQZ71_RS17395 (NQZ71_17415) - 3489944..3490366 (-) 423 WP_127735929.1 Fur family transcriptional regulator -
  NQZ71_RS17400 (NQZ71_17420) fabF 3490711..3491949 (-) 1239 WP_144452019.1 beta-ketoacyl-ACP synthase II -
  NQZ71_RS17405 (NQZ71_17425) - 3492009..3492947 (-) 939 WP_144452018.1 beta-ketoacyl-ACP synthase III -
  NQZ71_RS17410 (NQZ71_17430) - 3493203..3493559 (+) 357 WP_317011052.1 hypothetical protein -
  NQZ71_RS17415 (NQZ71_17435) med 3493627..3494592 (-) 966 WP_317011053.1 BMP family ABC transporter substrate-binding protein Regulator
  NQZ71_RS17420 (NQZ71_17440) - 3494637..3495404 (-) 768 WP_317011054.1 hypothetical protein -
  NQZ71_RS17425 (NQZ71_17445) - 3495546..3496286 (-) 741 WP_144452014.1 hydrolase -
  NQZ71_RS17430 (NQZ71_17450) - 3496506..3496697 (+) 192 WP_127735950.1 YjzD family protein -
  NQZ71_RS17435 (NQZ71_17455) clpB 3496759..3499356 (-) 2598 WP_317011055.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35559.26 Da        Isoelectric Point: 4.7453

>NTDB_id=717954 NQZ71_RS17415 WP_317011053.1 3493627..3494592(-) (med) [Niallia taxi strain NBC_Nia]
MNKLKLMLSFFIVLSTFFLASCGQADNKGQLKSVGLLVSGTVTDQVWGTKGYKGLLNIQSKYNVDVYYKEYVDSLALTER
AIEEFKHKGVNLIFGHGSEYAEFLDTLSKKYPDIHLISFNSSANNENTTSASFDGYTMGFFGGMVAGHMTKTNTISVIAA
FDTQPEVQGFRDGAMYENENVKVLTDFVQSWDNREKALMLLDTAIANEADIIYPAGDGFNVDIIEQVKAKGLYAIGYVSD
QSDLGKMTVLTSTVQDVSEMFDILASDFNEGKLKSGNISYGMKENVITLGKFSPSIEAAFIEKINQEIKQYKQTGKFPNQ
Q

Nucleotide


Download         Length: 966 bp        

>NTDB_id=717954 NQZ71_RS17415 WP_317011053.1 3493627..3494592(-) (med) [Niallia taxi strain NBC_Nia]
ATGAATAAATTGAAGTTAATGCTCTCCTTTTTTATTGTGCTGAGCACCTTCTTTCTTGCCTCCTGCGGACAAGCAGACAA
TAAGGGGCAATTGAAAAGCGTCGGTTTGCTTGTGAGTGGTACTGTTACAGACCAAGTTTGGGGCACAAAAGGGTATAAGG
GTTTATTAAATATCCAATCGAAATATAATGTTGATGTATATTATAAAGAATACGTCGACTCTCTCGCGCTTACAGAAAGG
GCGATCGAAGAATTTAAACATAAAGGAGTAAATCTAATTTTTGGACACGGCAGTGAGTATGCGGAGTTTTTGGATACTTT
GTCCAAAAAGTATCCTGATATTCATTTAATCAGTTTTAATAGCAGTGCTAACAATGAAAACACGACAAGTGCCTCTTTTG
ATGGTTATACAATGGGCTTTTTTGGAGGAATGGTTGCAGGCCATATGACGAAGACTAATACAATTTCGGTGATTGCTGCC
TTTGATACACAGCCTGAAGTTCAAGGATTCAGGGATGGCGCTATGTATGAAAATGAAAACGTTAAGGTGCTTACAGATTT
TGTGCAGAGTTGGGATAATCGTGAGAAGGCACTTATGCTGCTAGATACAGCAATAGCGAATGAAGCTGATATTATTTATC
CTGCAGGAGATGGGTTTAATGTTGATATTATTGAACAAGTGAAGGCAAAAGGGCTCTATGCAATCGGATATGTTTCAGAT
CAGTCTGATCTTGGCAAAATGACTGTTTTGACAAGTACTGTCCAGGATGTTTCTGAAATGTTTGACATTCTTGCCAGCGA
TTTTAATGAAGGGAAGCTGAAATCTGGCAATATTTCTTATGGTATGAAGGAAAATGTTATCACATTAGGAAAATTCAGTC
CTAGCATAGAAGCGGCATTTATAGAGAAAATAAATCAAGAAATTAAGCAATACAAACAGACAGGAAAGTTCCCTAATCAA
CAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(32-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

49.527

98.754

0.489