Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NQZ71_RS08715 Genome accession   NZ_CP102589
Coordinates   1771856..1773544 (+) Length   562 a.a.
NCBI ID   WP_260055375.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1766856..1778544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS08690 (NQZ71_08710) xseB 1766894..1767124 (+) 231 WP_127737503.1 exodeoxyribonuclease VII small subunit -
  NQZ71_RS08695 (NQZ71_08715) - 1767129..1768013 (+) 885 WP_144452682.1 polyprenyl synthetase family protein -
  NQZ71_RS08700 (NQZ71_08720) dxs 1768427..1770319 (+) 1893 WP_144452683.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NQZ71_RS08705 (NQZ71_08725) - 1770327..1771145 (+) 819 WP_144452684.1 TlyA family RNA methyltransferase -
  NQZ71_RS08710 (NQZ71_08730) ahrC 1771391..1771840 (+) 450 WP_275005862.1 transcriptional regulator AhrC/ArgR -
  NQZ71_RS08715 (NQZ71_08735) recN 1771856..1773544 (+) 1689 WP_260055375.1 DNA repair protein RecN Machinery gene
  NQZ71_RS08720 (NQZ71_08740) spoIVB 1773785..1775077 (+) 1293 WP_144452686.1 SpoIVB peptidase -
  NQZ71_RS08725 (NQZ71_08745) - 1775113..1776030 (-) 918 WP_275005858.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  NQZ71_RS08730 (NQZ71_08750) spo0A 1776454..1777248 (+) 795 WP_144452689.1 sporulation transcription factor Spo0A -
  NQZ71_RS08735 (NQZ71_08755) - 1777494..1777787 (-) 294 WP_144452691.1 hypothetical protein -
  NQZ71_RS08740 (NQZ71_08760) - 1778214..1778534 (-) 321 WP_127737526.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63253.15 Da        Isoelectric Point: 5.0898

>NTDB_id=717937 NQZ71_RS08715 WP_260055375.1 1771856..1773544(+) (recN) [Niallia taxi strain NBC_Nia]
MLNELSIKNFAIIESLAVSFRKGLTVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIENGHPCFLKM
QEFGIDIEEGTIILRRDISVSGKSVCRINGKLITISTLREIGSSLIDIHGQHEHQELMDETKHLMLLDTYAASELAPVFK
EYEGLYRTYTQTQKKLMNLTENEQQMAHRLDLLTFQHQEIINANLQKNEDDELLEEKKRLGNFERIFESIQTGYTALKGE
QKGLDWLGEVMGHMEEAASLDPEYADISESVSNSFYILEDVASRLRNSLDYLEYDPARLNSIEARLNEINSLKRKYGKSV
DEILEYAAKIEEELETLQNKETHIDMLEKELLSIKKDLLVEANELSSLRKKAAIRLTDDIHHELKELYMEKTIFEVRFNS
DEDNISKAGMDNVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKISS
VSAGSQVLCISHMPQVAAMSDTHLYIAKAIHDGRTSATVTPLETQDKIKEIARMISGTEITDLTKKHAKELLKLAQKVKN
KR

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=717937 NQZ71_RS08715 WP_260055375.1 1771856..1773544(+) (recN) [Niallia taxi strain NBC_Nia]
TTGCTTAATGAATTATCTATCAAAAACTTTGCCATTATTGAATCGCTTGCCGTCTCTTTCCGTAAAGGATTAACGGTTCT
GACAGGGGAAACAGGTGCTGGGAAATCAATTATAATTGATGCGATTAACCTGCTTGTTGGCGGAAGAGGCTCCGCGGAAT
TTGTTCGTCATGGAGAGGAAAAAGCAGAAATTGAAGGGCTGTTTTATATTGAAAATGGACATCCTTGCTTTTTGAAAATG
CAGGAATTTGGTATAGATATTGAAGAGGGTACGATTATCCTTAGAAGAGATATTTCCGTTTCCGGTAAAAGTGTTTGCCG
CATTAACGGAAAGCTTATTACTATCTCCACATTAAGAGAGATAGGCTCAAGTCTTATTGATATACATGGTCAGCATGAGC
ATCAGGAATTGATGGATGAAACAAAGCATCTCATGCTTCTTGATACGTATGCAGCTTCAGAGCTTGCGCCAGTGTTTAAG
GAATATGAAGGTTTATATCGTACGTATACCCAAACACAAAAAAAACTGATGAATTTGACTGAAAATGAACAGCAAATGGC
GCATCGTCTCGACTTACTAACATTTCAGCACCAGGAAATCATCAATGCAAACTTACAGAAAAATGAAGATGACGAATTGC
TGGAGGAAAAAAAGCGCCTCGGCAACTTTGAAAGAATTTTCGAAAGCATCCAAACAGGATACACAGCCTTAAAGGGTGAG
CAAAAAGGGCTTGACTGGCTTGGTGAAGTGATGGGGCATATGGAAGAAGCTGCAAGTCTTGACCCGGAATATGCAGATAT
TTCCGAGTCTGTGTCTAACAGCTTTTATATTCTTGAGGATGTTGCAAGCAGGTTGAGAAACAGCCTTGATTATCTCGAAT
ATGATCCTGCACGGCTTAATAGTATTGAAGCAAGGTTGAATGAAATTAATTCACTTAAGAGAAAATATGGAAAATCTGTT
GATGAAATACTAGAATATGCTGCTAAAATTGAGGAAGAGCTAGAAACACTTCAAAATAAAGAAACACATATTGATATGCT
CGAAAAAGAATTATTAAGCATAAAAAAGGATTTGCTTGTTGAAGCAAATGAACTTAGCTCCCTTCGCAAAAAAGCAGCTA
TTCGATTAACAGACGATATTCATCATGAATTGAAAGAGCTTTATATGGAGAAAACCATCTTTGAGGTAAGATTTAACTCA
GACGAGGATAATATCTCCAAAGCAGGGATGGATAATGTGGAATTTTATATATCTACAAATCCAGGCGAACCGCTTAAGCC
TTTGTCTAAAATAGTCTCAGGTGGAGAGCTGTCGAGGATGATGCTCGCGTTAAAGAGCATTTTCTCGAAGCATCAAGGTG
TCACTTCCATCATTTTTGATGAGGTGGATACAGGCGTAAGCGGCAGAGTCGCACAGGCAATTGCAGAAAAAATTTCAAGT
GTCTCAGCTGGCTCTCAAGTGCTTTGTATTTCCCATATGCCTCAAGTAGCGGCAATGTCTGATACACATCTTTACATTGC
AAAAGCAATTCATGATGGACGGACATCTGCAACAGTTACTCCATTGGAAACACAGGATAAAATAAAGGAAATTGCGAGAA
TGATTTCCGGAACTGAAATAACGGATTTAACAAAAAAACATGCAAAAGAGCTGTTAAAATTGGCCCAAAAGGTCAAGAAT
AAAAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.93

100

0.612