Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NQZ71_RS00920 Genome accession   NZ_CP102589
Coordinates   187216..188172 (-) Length   318 a.a.
NCBI ID   WP_144457400.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182216..193172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS00900 (NQZ71_00900) - 183159..184148 (-) 990 WP_317011195.1 Gfo/Idh/MocA family oxidoreductase -
  NQZ71_RS00905 (NQZ71_00905) - 184303..185250 (-) 948 WP_275009641.1 siderophore ABC transporter substrate-binding protein -
  NQZ71_RS00910 (NQZ71_00910) - 185521..186279 (-) 759 WP_144457396.1 ABC transporter ATP-binding protein -
  NQZ71_RS00915 (NQZ71_00915) - 186273..187229 (-) 957 WP_144457398.1 iron chelate uptake ABC transporter family permease subunit -
  NQZ71_RS00920 (NQZ71_00920) ceuB 187216..188172 (-) 957 WP_144457400.1 ABC transporter permease Machinery gene
  NQZ71_RS00925 (NQZ71_00925) qoxD 188419..188718 (-) 300 WP_144457402.1 cytochrome aa3 quinol oxidase subunit IV -
  NQZ71_RS00930 (NQZ71_00930) qoxC 188722..189321 (-) 600 WP_144457404.1 cytochrome aa3 quinol oxidase subunit III -
  NQZ71_RS00935 (NQZ71_00935) qoxB 189321..191276 (-) 1956 WP_144457539.1 cytochrome aa3 quinol oxidase subunit I -
  NQZ71_RS00940 (NQZ71_00940) qoxA 191276..192220 (-) 945 WP_144457406.1 cytochrome aa3 quinol oxidase subunit II -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35302.75 Da        Isoelectric Point: 9.8686

>NTDB_id=717908 NQZ71_RS00920 WP_144457400.1 187216..188172(-) (ceuB) [Niallia taxi strain NBC_Nia]
MKIRYLSIMLVLLSIASLFIGVIDINPLSIFQLTEDQKEILLISRFPRLISIIIAGISLSICGLIMQQITRNKFVSPTTA
GTMDWARFGILIALMMFTTATPIVKMLVAFVFALLGTFLFMQILNRIKFKDAIFIPLVGLMLGNIISSITTFFSMKHDLV
QNMSSWLQGDFSLIMEGRYELLYISIPVVIVAYLYANKFTIAGMGEEFSKNLGLNHKRVVNIGLVIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYKGDNLKNSLTHTALLGANFVLICDILGRVIIYPYEISIGVMVGVIGSAIFLYLLVRRKTYESA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=717908 NQZ71_RS00920 WP_144457400.1 187216..188172(-) (ceuB) [Niallia taxi strain NBC_Nia]
ATGAAGATAAGATATTTAAGCATCATGTTAGTACTGTTATCGATTGCCTCCTTGTTTATAGGAGTAATTGATATTAATCC
TCTAAGTATATTTCAATTAACAGAGGATCAGAAAGAAATTTTATTAATCAGCAGATTTCCTCGTCTAATAAGTATTATTA
TTGCAGGTATAAGCTTAAGCATTTGCGGACTAATTATGCAACAAATCACTAGAAATAAATTCGTGTCCCCAACGACTGCA
GGGACAATGGACTGGGCAAGATTTGGCATCCTTATTGCGCTAATGATGTTCACTACTGCAACCCCAATTGTTAAGATGCT
TGTTGCCTTCGTTTTTGCATTGCTTGGTACATTCTTGTTCATGCAAATATTAAATCGGATAAAATTCAAGGATGCTATAT
TTATTCCACTTGTTGGTTTAATGCTTGGAAACATAATTAGCTCGATTACAACATTCTTTTCTATGAAGCATGATCTTGTG
CAAAACATGTCATCATGGCTCCAAGGTGATTTCTCACTGATTATGGAAGGAAGATACGAGTTACTTTACATAAGTATTCC
AGTAGTCATTGTCGCATACCTATATGCAAATAAATTCACAATTGCTGGAATGGGTGAGGAATTCTCAAAGAATTTAGGTC
TAAACCATAAGAGAGTTGTTAATATCGGACTTGTCATTGTGGCGCTTGTATCATCAGTTGTTTTGCTTACAGTCGGCATG
ATTCCATTCTTAGGTCTCATCATTCCTAATATAGTTTCCCTTTACAAGGGCGATAACTTGAAGAATAGCTTAACACATAC
AGCATTATTAGGAGCAAATTTCGTTCTTATATGCGACATACTTGGACGGGTTATCATTTATCCATATGAAATCTCGATAG
GTGTGATGGTTGGGGTTATCGGAAGTGCTATCTTCCTTTATTTATTGGTAAGGAGAAAAACGTATGAATCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.371

0.531