Detailed information NTG0717896

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PSH15_RS07690
• Genome accession: NZ_CP117300
• Coordinates: 1597788..1598792 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 0201761-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1592788..1603792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH15_RS07660 (PSH15_07660)	fghA	1592881..1593732 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PSH15_RS07665 (PSH15_07665)	ispF	1593803..1594276 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PSH15_RS07670 (PSH15_07670)	truD	1594273..1595340 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PSH15_RS07675 (PSH15_07675)	surE	1595328..1596076 (+)	749	Protein_1519	5'/3'-nucleotidase SurE	-
PSH15_RS07680 (PSH15_07680)	-	1596109..1596744 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PSH15_RS07685 (PSH15_07685)	-	1596790..1597683 (+)	894	WP_010791885.1	peptidoglycan DD-metalloendopeptidase family protein	-
PSH15_RS07690 (PSH15_07690)	rpoS	1597788..1598792 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PSH15_RS07695 (PSH15_07695)	fdxA	1599219..1599542 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PSH15_RS07700 (PSH15_07700)	mutS	1599609..1602176 (-)	2568	WP_241097928.1	DNA mismatch repair protein MutS	-
PSH15_RS07705 (PSH15_07705)	-	1602302..1603309 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=717896 PSH15_RS07690 WP_003113871.1 1597788..1598792(+) (rpoS) [Pseudomonas aeruginosa strain 0201761-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=717896 PSH15_RS07690 WP_003113871.1 1597788..1598792(+) (rpoS) [Pseudomonas aeruginosa strain 0201761-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653