Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NUX13_RS01655 Genome accession   NZ_CP102580
Coordinates   353434..354252 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A9844     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348434..359252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUX13_RS01620 (NUX13_01620) - 349017..349146 (-) 130 Protein_309 hypothetical protein -
  NUX13_RS01625 (NUX13_01625) rpoZ 349185..349463 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NUX13_RS01630 (NUX13_01630) gmk 349536..350165 (-) 630 WP_000015937.1 guanylate kinase -
  NUX13_RS01635 (NUX13_01635) ispH 350288..351238 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NUX13_RS01640 (NUX13_01640) fimU 351408..351881 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  NUX13_RS01645 (NUX13_01645) pilV 351875..352435 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  NUX13_RS01650 (NUX13_01650) pilW 352436..353437 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  NUX13_RS01655 (NUX13_01655) pilX 353434..354252 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NUX13_RS01660 (NUX13_01660) pilY1 354264..358118 (+) 3855 WP_216076302.1 PilC/PilY family type IV pilus protein Machinery gene
  NUX13_RS01665 (NUX13_01665) pilY2 358131..358613 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  NUX13_RS01670 (NUX13_01670) pilE 358610..359035 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=717795 NUX13_RS01655 WP_000149374.1 353434..354252(+) (pilX) [Acinetobacter baumannii strain A9844]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=717795 NUX13_RS01655 WP_000149374.1 353434..354252(+) (pilX) [Acinetobacter baumannii strain A9844]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993