Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NR792_RS33060 Genome accession   NZ_CP102577
Coordinates   8218268..8219629 (-) Length   453 a.a.
NCBI ID   WP_375756696.1    Uniprot ID   -
Organism   Corallococcus exercitus strain SDU142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8213268..8224629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR792_RS33040 (NR792_33095) - 8213464..8214033 (+) 570 WP_375756692.1 NUDIX hydrolase -
  NR792_RS33045 (NR792_33100) - 8214002..8215480 (-) 1479 WP_375756693.1 ATP-binding protein -
  NR792_RS33050 (NR792_33105) - 8215749..8217467 (+) 1719 WP_375756694.1 hypothetical protein -
  NR792_RS33055 (NR792_33110) - 8217477..8218256 (+) 780 WP_375756695.1 hypothetical protein -
  NR792_RS33060 (NR792_33115) radA 8218268..8219629 (-) 1362 WP_375756696.1 DNA repair protein RadA Machinery gene
  NR792_RS33065 (NR792_33120) - 8219810..8220079 (+) 270 WP_014394015.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  NR792_RS33070 (NR792_33125) bioB 8220253..8221278 (+) 1026 WP_375756697.1 biotin synthase BioB -
  NR792_RS33075 (NR792_33130) bioF 8221275..8222456 (+) 1182 WP_375756698.1 8-amino-7-oxononanoate synthase -
  NR792_RS33080 (NR792_33135) bioD 8222446..8223141 (+) 696 WP_375756699.1 dethiobiotin synthase -
  NR792_RS33085 (NR792_33140) - 8223257..8223535 (+) 279 WP_120552248.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48121.29 Da        Isoelectric Point: 7.0707

>NTDB_id=717752 NR792_RS33060 WP_375756696.1 8218268..8219629(-) (radA) [Corallococcus exercitus strain SDU142]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGASRPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLARHGPVLYVSGEESLRQTKMRAERLRVESESIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVTDPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVDSRLAEAAKMGFQRVVLPAGSARRVEETKLQVVGVETLSEALSAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=717752 NR792_RS33060 WP_375756696.1 8218268..8219629(-) (radA) [Corallococcus exercitus strain SDU142]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCGGGGGGCG
CTTCACGGCCGGTGAAGCTCCAGGACGTGACGGCGGAGACGGAGGTCCGCCGCCGGACGGGCATCACGGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGGGCGGTTCGCTGGTGCTCCTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTTTT
GGCGGCGCTGGACAAGCTGGCGCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGAGCGAGTCCATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCCCTGAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCCATCGCGGGTCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCACCCGTTCCGGCTGTTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGACGGACCCCTCCGCGCTGTTCCTCTCCGAGCGGCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACCCGTCCGTTGCTGGTAGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
AGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTCCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGCTGAGCGAACCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGCTGGACGCGAAGACGCTGGTGCTGGGAGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGACTCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCGGCCGGCAG
CGCGCGGCGCGTGGAGGAGACGAAGCTCCAGGTGGTGGGCGTGGAGACGCTGAGCGAAGCCTTGTCCGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(57-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.212

99.779

0.521
  radA Streptococcus mitis NCTC 12261

51.656

100

0.517
  radA Streptococcus pneumoniae Rx1

51.656

100

0.517
  radA Streptococcus pneumoniae D39

51.656

100

0.517
  radA Streptococcus pneumoniae R6

51.656

100

0.517
  radA Streptococcus pneumoniae TIGR4

51.656

100

0.517
  radA Streptococcus mitis SK321

51.435

100

0.514