Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NUU05_RS08290 Genome accession   NZ_CP102538
Coordinates   1590627..1591070 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585627..1596070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS08275 (NUU05_08240) - 1586514..1586885 (-) 372 WP_224103209.1 GNAT family acetyltransferase -
  NUU05_RS08280 (NUU05_08245) rcrQ 1587041..1588819 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  NUU05_RS08285 (NUU05_08250) rcrP 1588809..1590623 (-) 1815 WP_011680805.1 ABC transporter ATP-binding protein Regulator
  NUU05_RS08290 (NUU05_08255) rcrR 1590627..1591070 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NUU05_RS08295 (NUU05_08260) - 1591260..1591670 (-) 411 WP_011680804.1 peptide deformylase -
  NUU05_RS08300 (NUU05_08265) gdhA 1591928..1593280 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  NUU05_RS08305 (NUU05_08270) - 1593624..1594731 (+) 1108 Protein_1580 AAA family ATPase -
  NUU05_RS08310 (NUU05_08275) - 1594795..1595547 (+) 753 WP_011680801.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=717647 NUU05_RS08290 WP_002945408.1 1590627..1591070(-) (rcrR) [Streptococcus thermophilus strain TH-4]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=717647 NUU05_RS08290 WP_002945408.1 1590627..1591070(-) (rcrR) [Streptococcus thermophilus strain TH-4]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537