Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   NUU05_RS02720 Genome accession   NZ_CP102538
Coordinates   496521..497597 (+) Length   358 a.a.
NCBI ID   WP_011681549.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 491521..502597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS02690 (NUU05_02680) - 492408..493154 (+) 747 WP_100284797.1 amino acid ABC transporter permease -
  NUU05_RS02695 (NUU05_02685) - 493154..493897 (+) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein -
  NUU05_RS02700 (NUU05_02690) - 494112..494336 (+) 225 WP_002951743.1 DUF4059 family protein -
  NUU05_RS02705 (NUU05_02695) trxB 494369..495322 (+) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  NUU05_RS02710 (NUU05_02700) rsmD 495413..496012 (+) 600 Protein_472 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NUU05_RS02715 (NUU05_02705) coaD 496046..496543 (+) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  NUU05_RS02720 (NUU05_02710) sepM 496521..497597 (+) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  NUU05_RS02725 (NUU05_02715) - 497682..498626 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  NUU05_RS02730 (NUU05_02720) - 498623..499171 (+) 549 WP_011226462.1 class I SAM-dependent methyltransferase -
  NUU05_RS02735 (NUU05_02725) - 499168..499410 (+) 243 WP_011226461.1 hypothetical protein -
  NUU05_RS02740 (NUU05_02730) - 499419..501485 (+) 2067 WP_011681548.1 sodium:proton antiporter -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39172.02 Da        Isoelectric Point: 9.3888

>NTDB_id=717617 NUU05_RS02720 WP_011681549.1 496521..497597(+) (sepM) [Streptococcus thermophilus strain TH-4]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGNTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=717617 NUU05_RS02720 WP_011681549.1 496521..497597(+) (sepM) [Streptococcus thermophilus strain TH-4]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAATACCTTTGATAATTCTACTGACATGATTAAATATGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains


Predicted by InterproScan.

(137-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

62.757

95.251

0.598