Detailed information NTG0717423

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NUU06_RS06540
• Genome accession: NZ_CP102519
• Coordinates: 1311422..1312795 (-)
• Length: 457 a.a.
• NCBI ID: WP_257795793.1
• Uniprot ID: -
• Organism: Ligilactobacillus salivarius strain SS-258
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1306422..1317795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUU06_RS06520 (NUU06_06560)	-	1306702..1307109 (-)	408	WP_003700685.1	Mini-ribonuclease 3	-
NUU06_RS06525 (NUU06_06565)	cysS	1307102..1308514 (-)	1413	WP_003702615.1	cysteine--tRNA ligase	-
NUU06_RS06530 (NUU06_06570)	gltX	1308666..1310153 (-)	1488	WP_034983217.1	glutamate--tRNA ligase	-
NUU06_RS06535 (NUU06_06575)	-	1310284..1311396 (-)	1113	WP_003700688.1	PIN/TRAM domain-containing protein	-
NUU06_RS06540 (NUU06_06580)	radA	1311422..1312795 (-)	1374	WP_257795793.1	DNA repair protein RadA	Machinery gene
NUU06_RS06545 (NUU06_06585)	-	1312813..1313349 (-)	537	WP_034983218.1	hypothetical protein	-
NUU06_RS06550 (NUU06_06590)	-	1313505..1313783 (+)	279	WP_003702618.1	GNAT family N-acetyltransferase	-
NUU06_RS06555 (NUU06_06595)	-	1313872..1315206 (+)	1335	WP_003700692.1	aminopeptidase C	-
NUU06_RS06560 (NUU06_06600)	-	1315416..1315769 (+)	354	WP_034983230.1	bacteriocin immunity protein	-
NUU06_RS06565 (NUU06_06605)	-	1315939..1316613 (-)	675	WP_003706506.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
NUU06_RS06570 (NUU06_06610)	-	1316635..1317579 (-)	945	WP_003700695.1	AEC family transporter	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49752.40 Da
• Isoelectric Point: 8.0254

>NTDB_id=717423 NUU06_RS06540 WP_257795793.1 1311422..1312795(-) (radA) [Ligilactobacillus salivarius strain SS-258]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMTATVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVELQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKEIEVVGVSTLNQALKLIFS

Nucleotide

• Length: 1374 bp

>NTDB_id=717423 NUU06_RS06540 WP_257795793.1 1311422..1312795(-) (radA) [Ligilactobacillus salivarius strain SS-258]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGTTATTTAGGACGCTGCCCTAATTG
TGGTTCTTGGAATAGCTTGGTAGAGGAAATAGAGAAAAAGGAAAGTTCAACTAAAGCACAGCCTAGAGTTAGCATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTGGAGACTCCAAGATTTAAAACTAATTTAGAAGAATTG
AATCGTGTTTTAGGTGGCGGAATTGTTCCCGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGCAAGTCTACATT
ATTACTACAAGTTTCTGGACAATTATCTACTCTCGGGAAAAAGGTTCTTTATGTTTCTGGGGAAGAAAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCTGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATCGATTCGGTGCAGACAATGCAGGAGCCAGAAATGACAGCCAC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACTGTCTTTG
TTGTAGGACATGTTACTAAAGGTGGAGCAATTGCAGGGCCTAAAATTTTAGAACACATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCTGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATCTT
TGAAATGAAAAATGGAGGATTAAGCGAAGTTGCTAATCCATCAGAGATTTTTCTAGAAGAAAGATTAAAAGGGGCTACGG
GATCAGCTGTCGTTGCTTCTCTTGAAGGAACTAGACCCATATTGGTAGAATTACAAGCACTAGTAACACCGACTGCATTT
GGAAATGCTAAGCGAACAACAACTGGTTTAGATCACAATCGAGTTGCGTTACTGATGGCAGTACTTGAAAAAAGAGCTGG
TTTGTTATTGCAAAATCAGGATGCTTATTTGAAGGCTGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGATTTAGCCA
TTGCTGTTAGTTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGGGAAGTGGGATTAACT
GGTGAAATAAGACGAGTTAATCGTATTGAACAGCGTGTTGTTGAGGCTGCTAAGCTAGGATTTAAGCGAGTATTTTTACC
AAAGAACAACTTAGATGGTTGGATGCCTCCAAAAGAGATTGAAGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (364-430)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (67-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	68.49	100	0.685
radA	Streptococcus mitis SK321	68.271	100	0.683
radA	Streptococcus pneumoniae Rx1	68.271	100	0.683
radA	Streptococcus pneumoniae D39	68.271	100	0.683
radA	Streptococcus pneumoniae R6	68.271	100	0.683
radA	Streptococcus pneumoniae TIGR4	68.271	100	0.683
radA	Bacillus subtilis subsp. subtilis str. 168	65.342	99.125	0.648