Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NUU06_RS03040 Genome accession   NZ_CP102519
Coordinates   613388..615055 (+) Length   555 a.a.
NCBI ID   WP_003699855.1    Uniprot ID   C2EEM9
Organism   Ligilactobacillus salivarius strain SS-258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608388..620055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU06_RS03010 (NUU06_03020) folD 608770..609627 (+) 858 WP_003705927.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  NUU06_RS03015 (NUU06_03025) xseA 609620..610960 (+) 1341 WP_086201298.1 exodeoxyribonuclease VII large subunit -
  NUU06_RS03020 (NUU06_03030) - 610960..611187 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  NUU06_RS03025 (NUU06_03035) - 611153..612070 (+) 918 WP_308221244.1 farnesyl diphosphate synthase -
  NUU06_RS03030 (NUU06_03040) - 612073..612900 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  NUU06_RS03035 (NUU06_03045) - 612925..613383 (+) 459 WP_003699854.1 arginine repressor -
  NUU06_RS03040 (NUU06_03050) recN 613388..615055 (+) 1668 WP_003699855.1 DNA repair protein RecN Machinery gene
  NUU06_RS03045 (NUU06_03055) lexA 615119..615739 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  NUU06_RS03050 (NUU06_03060) - 615850..616140 (+) 291 WP_003699858.1 DUF896 domain-containing protein -
  NUU06_RS03055 (NUU06_03065) - 616267..616491 (+) 225 WP_003705934.1 YneF family protein -
  NUU06_RS03060 (NUU06_03070) yihA 616574..617164 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NUU06_RS03065 (NUU06_03075) - 617182..617481 (+) 300 WP_003699862.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  NUU06_RS03070 (NUU06_03080) - 617585..619399 (+) 1815 WP_257796034.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63193.92 Da        Isoelectric Point: 4.8501

>NTDB_id=717412 NUU06_RS03040 WP_003699855.1 613388..615055(+) (recN) [Ligilactobacillus salivarius strain SS-258]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=717412 NUU06_RS03040 WP_003699855.1 613388..615055(+) (recN) [Ligilactobacillus salivarius strain SS-258]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGTATTACTCACTTGCCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C2EEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.427

100

0.499