Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NUG39_RS15790 Genome accession   NZ_CP102500
Coordinates   3234456..3235070 (-) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter youngae strain CF10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3229456..3240070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG39_RS15775 (NUG39_15775) helD 3229680..3231734 (-) 2055 WP_257748082.1 DNA helicase IV -
  NUG39_RS15780 (NUG39_15780) - 3231860..3232306 (+) 447 WP_257748083.1 YccF domain-containing protein -
  NUG39_RS15785 (NUG39_15785) yccS 3232325..3234478 (+) 2154 WP_005123516.1 YccS family putative transporter -
  NUG39_RS15790 (NUG39_15790) sxy/tfoX 3234456..3235070 (-) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  NUG39_RS15795 (NUG39_15795) sulA 3235287..3235796 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  NUG39_RS15800 (NUG39_15800) ompA 3236152..3237201 (+) 1050 WP_048212110.1 porin OmpA -
  NUG39_RS15805 (NUG39_15805) matP 3237300..3237752 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  NUG39_RS15810 (NUG39_15810) - 3237938..3239698 (+) 1761 WP_048212112.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=717340 NUG39_RS15790 WP_048212109.1 3234456..3235070(-) (sxy/tfoX) [Citrobacter youngae strain CF10]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=717340 NUG39_RS15790 WP_048212109.1 3234456..3235070(-) (sxy/tfoX) [Citrobacter youngae strain CF10]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716