Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MGCS36089_RS08230 Genome accession   NZ_CP117284
Coordinates   1663629..1664237 (+) Length   202 a.a.
NCBI ID   WP_003060942.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658629..1669237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS08200 (MGCS36089_03340) - 1658895..1659377 (+) 483 WP_004230535.1 S-ribosylhomocysteine lyase -
  MGCS36089_RS08205 (MGCS36089_03342) - 1659491..1660972 (-) 1482 WP_015017303.1 cell division site-positioning protein MapZ family protein -
  MGCS36089_RS08210 (MGCS36089_03344) - 1660986..1662140 (-) 1155 WP_012767432.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  MGCS36089_RS08220 (MGCS36089_03348) gpsB 1662585..1662911 (-) 327 WP_003060950.1 cell division regulator GpsB -
  MGCS36089_RS08225 (MGCS36089_03350) - 1663033..1663548 (-) 516 WP_003056762.1 DUF1273 domain-containing protein -
  MGCS36089_RS08230 (MGCS36089_03352) recU 1663629..1664237 (+) 609 WP_003060942.1 Holliday junction resolvase RecU Machinery gene
  MGCS36089_RS08235 (MGCS36089_03354) pbp1a 1664224..1666389 (+) 2166 WP_084916474.1 penicillin-binding protein PBP1A -
  MGCS36089_RS08240 (MGCS36089_03356) pepC 1666435..1667766 (-) 1332 WP_015017306.1 aminopeptidase C -
  MGCS36089_RS08245 (MGCS36089_03358) nadE 1667947..1668771 (-) 825 WP_042357972.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23336.95 Da        Isoelectric Point: 9.9487

>NTDB_id=717325 MGCS36089_RS08230 WP_003060942.1 1663629..1664237(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=717325 MGCS36089_RS08230 WP_003060942.1 1663629..1664237(+) (recU) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5