Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCN95_RS16755 Genome accession   NZ_CP102490
Coordinates   3413363..3413959 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BA13643     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408363..3418959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCN95_RS16740 (LCN95_16745) helD 3408571..3410625 (-) 2055 WP_004179218.1 DNA helicase IV -
  LCN95_RS16745 (LCN95_16750) - 3410750..3411196 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LCN95_RS16750 (LCN95_16755) yccS 3411214..3413349 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LCN95_RS16755 (LCN95_16760) sxy/tfoX 3413363..3413959 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LCN95_RS16760 (LCN95_16765) sulA 3414308..3414817 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LCN95_RS16765 (LCN95_16770) ompA 3415170..3416240 (+) 1071 WP_002898408.1 porin OmpA -
  LCN95_RS16770 (LCN95_16775) matP 3416372..3416824 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LCN95_RS16775 (LCN95_16780) - 3417010..3418767 (+) 1758 WP_016529118.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=717308 LCN95_RS16755 WP_004179217.1 3413363..3413959(-) (sxy/tfoX) [Klebsiella pneumoniae strain BA13643]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=717308 LCN95_RS16755 WP_004179217.1 3413363..3413959(-) (sxy/tfoX) [Klebsiella pneumoniae strain BA13643]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51