Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NUI00_RS08250 Genome accession   NZ_CP102488
Coordinates   1666130..1666759 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O15:H18 strain ST69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661130..1671759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUI00_RS08235 (NUI00_08235) helD 1661372..1663426 (-) 2055 WP_001305911.1 DNA helicase IV -
  NUI00_RS08240 (NUI00_08240) yccF 1663549..1663995 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NUI00_RS08245 (NUI00_08245) yccS 1664005..1666167 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NUI00_RS08250 (NUI00_08250) sxy/tfoX 1666130..1666759 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NUI00_RS08255 (NUI00_08255) sulA 1666978..1667487 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NUI00_RS08260 (NUI00_08260) ompA 1667843..1668883 (+) 1041 WP_001309394.1 porin OmpA -
  NUI00_RS08265 (NUI00_08265) matP 1668959..1669411 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NUI00_RS08270 (NUI00_08270) ycbZ 1669597..1671357 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=717275 NUI00_RS08250 WP_000839153.1 1666130..1666759(-) (sxy/tfoX) [Escherichia coli O15:H18 strain ST69]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=717275 NUI00_RS08250 WP_000839153.1 1666130..1666759(-) (sxy/tfoX) [Escherichia coli O15:H18 strain ST69]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1