Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQE15_RS15615 Genome accession   NZ_CP102486
Coordinates   3122356..3123714 (-) Length   452 a.a.
NCBI ID   WP_265942584.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3117356..3128714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS15605 - 3117758..3120244 (-) 2487 WP_265942582.1 ABC transporter permease -
  NQE15_RS15610 - 3120241..3122328 (-) 2088 WP_265942583.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  NQE15_RS15615 radA 3122356..3123714 (-) 1359 WP_265942584.1 DNA repair protein RadA Machinery gene
  NQE15_RS15620 alr 3123715..3124808 (-) 1094 Protein_3069 alanine racemase -
  NQE15_RS15625 - 3124805..3125707 (-) 903 WP_265942585.1 LysR family transcriptional regulator -
  NQE15_RS15630 lplT 3125982..3127247 (+) 1266 WP_265942586.1 lysophospholipid transporter LplT -
  NQE15_RS15635 - 3127255..3128058 (-) 804 WP_265942587.1 uracil-DNA glycosylase -
  NQE15_RS15640 rimI 3128055..3128516 (-) 462 WP_265942588.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48233.56 Da        Isoelectric Point: 7.2048

>NTDB_id=717254 NQE15_RS15615 WP_265942584.1 3122356..3123714(-) (radA) [Dechloromonas sp. A34]
MAKAKSIYVCSECGASSPKWQGQCPGCSEWNTLVESVAEKSTGHRFESLAPTARLQTLSQIEAREVERVATGIGEFDRAL
GGGLVSGGVVLIGGDPGIGKSTLLLQALAHLSAEHRVLYVSGEESGEQVALRARRLGLDTRDLQLMAEINLERILATLQA
EKPQVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQSGITVLLVGHVTKDGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAIKNRFGAVNEIGVFAMTETGLKGVSNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDSAHGNPRRL
TVGLEAQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLLSITSSLKNKPLPSKLIVFGEVGLAGEIRPA
PRGQERLKEAAKLGFTRALIPEANRPKQAIAGMEVIAVRRVEEAVARIRELE

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=717254 NQE15_RS15615 WP_265942584.1 3122356..3123714(-) (radA) [Dechloromonas sp. A34]
GTGGCCAAGGCGAAGTCGATCTACGTTTGTAGCGAGTGCGGGGCGAGCAGCCCGAAATGGCAGGGCCAGTGCCCGGGTTG
CAGCGAGTGGAATACCCTGGTCGAAAGCGTGGCCGAGAAAAGCACGGGGCATCGCTTCGAGTCCTTGGCGCCGACGGCAC
GGTTGCAGACGCTGTCGCAAATCGAGGCCCGTGAAGTCGAGCGGGTGGCGACCGGGATCGGCGAATTCGACCGGGCGCTC
GGCGGCGGACTGGTCTCCGGCGGAGTGGTGCTGATCGGTGGCGACCCGGGCATCGGCAAGAGCACCCTACTGTTGCAGGC
GCTGGCCCATCTCTCGGCCGAGCACCGGGTGCTCTACGTCAGCGGCGAGGAATCGGGCGAACAGGTGGCTTTGCGCGCCC
GCCGGCTTGGCCTCGACACCCGCGATCTGCAACTGATGGCCGAGATCAACCTGGAGCGCATTCTCGCTACCTTGCAGGCG
GAAAAACCGCAGGTGGCGGTGATCGACTCGATCCAGACCCTGTGGTCCGATCAATTGTCGAGCGCCCCGGGTTCGGTGGC
CCAGGTTCGCGAATGCGCGGCCCAGCTGACGCGGCTGGCCAAGCAGTCCGGCATCACCGTGCTGCTCGTCGGCCACGTCA
CCAAGGACGGAGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATTGTAGACACCGTGCTTTATTTCGAAGGCGATACCCAT
TCCAGTTTCCGCCTGGTGCGGGCGATCAAGAACCGCTTTGGCGCGGTCAATGAAATCGGCGTGTTTGCGATGACCGAAAC
TGGGTTGAAAGGCGTGAGCAATCCCTCGGCACTGTTCCTGTCGCAACATGGCCAGGACGTCGCAGGCTCTTGCGTGATGG
TGACGCAGGAGGGCACGCGTCCCCTGCTGGTCGAGATCCAGGCACTGGTCGATAGTGCCCACGGCAATCCGCGGCGCCTG
ACGGTCGGCCTCGAAGCGCAGCGGCTGGCCATGCTGCTGGCGGTGCTGCATCGCCACGCCGGGATTGTGTGCTTTGACCA
GGATGTCTTCGTCAATGCCGTCGGTGGCGTCAAGATCACCGAGCCGGCGGCCGACCTGGCGGTACTGCTGTCGATAACAT
CGTCGTTGAAAAACAAGCCTCTACCATCGAAACTTATAGTATTTGGTGAGGTTGGCCTGGCCGGCGAGATCCGGCCGGCA
CCGCGCGGCCAGGAGCGGCTGAAGGAAGCTGCCAAGCTGGGCTTCACCCGGGCCCTGATTCCCGAGGCCAATCGGCCGAA
ACAGGCGATTGCAGGCATGGAGGTGATCGCCGTTAGGCGCGTCGAGGAAGCGGTGGCGCGGATCCGTGAGTTGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.507
  radA Streptococcus pneumoniae Rx1

47.253

100

0.476
  radA Streptococcus pneumoniae D39

47.253

100

0.476
  radA Streptococcus pneumoniae R6

47.253

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.253

100

0.476
  radA Streptococcus mitis SK321

46.93

100

0.473
  radA Streptococcus mitis NCTC 12261

46.813

100

0.471